Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-271 937.9 487 100.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.5e-241 838.6 466 94.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.7e-240 835.1 466 94.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.8e-239 832.4 466 93.1
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.0e-239 831.2 466 93.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 5.7e-238 827.4 473 92.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.3e-231 805.4 466 91.8
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.5e-227 791.6 466 88.0
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.6e-224 781.6 467 86.7
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 6.2e-224 780.8 463 87.0
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 6.2e-224 780.8 466 86.3
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.4e-223 779.6 466 85.8
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.1e-223 778.5 466 85.8
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.0e-223 778.1 466 86.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 5.2e-223 777.7 466 85.6
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 8.9e-223 776.9 466 85.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 8.9e-223 776.9 466 85.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.5e-222 776.2 466 85.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.4e-222 774.6 466 85.6
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 5.8e-222 774.2 468 86.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 5.8e-222 774.2 464 86.0
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 9.8e-222 773.5 459 86.7
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.9e-221 771.9 466 85.2
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.9e-221 771.9 466 85.6
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.7e-221 771.5 466 85.0
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 3.7e-221 771.5 466 85.2
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.4e-220 769.6 466 85.4
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.9e-220 769.2 466 85.0
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.4e-220 768.8 463 84.4
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 3.2e-220 768.5 464 84.9
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.2e-220 768.5 466 84.1
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.1e-220 768.1 466 85.0
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 9.2e-220 766.9 466 84.8
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.2e-219 766.5 466 84.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.7e-219 765.4 464 84.7
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.7e-219 765.4 467 84.4
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 3.5e-219 765.0 466 84.3
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.5e-219 765.0 467 84.4
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 6.0e-219 764.2 467 84.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.0e-219 764.2 466 84.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 7.8e-219 763.8 466 84.3
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.8e-219 763.8 467 83.9
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.0e-218 763.5 466 84.3
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.0e-218 763.5 463 85.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.0e-218 763.5 466 85.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.3e-218 763.1 466 83.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.3e-218 763.1 466 83.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.3e-218 763.1 466 83.3
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.3e-218 762.3 466 83.7
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.3e-218 762.3 466 83.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 2.3e-218 762.3 466 83.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.3e-218 762.3 462 84.4
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 3.0e-218 761.9 466 84.5
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.0e-218 761.9 466 83.3
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.0e-218 761.9 466 83.5
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 3.0e-218 761.9 484 82.0
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.0e-218 761.9 466 84.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 3.9e-218 761.5 467 83.5
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.9e-218 761.5 463 85.3
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.9e-218 761.5 466 83.9
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 5.0e-218 761.1 466 83.7
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 6.6e-218 760.8 466 83.5
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 6.6e-218 760.8 466 83.5
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.5e-217 759.6 466 83.7
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.5e-217 759.6 467 83.3
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.9e-217 759.2 466 83.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-217 759.2 466 83.7
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.9e-217 759.2 484 82.2
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.3e-217 758.4 467 83.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 5.6e-217 757.7 466 83.7
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 7.3e-217 757.3 466 83.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.1e-216 755.7 467 82.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.8e-216 755.4 467 83.5
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.2e-216 754.2 467 82.0
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-215 753.4 467 82.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-215 753.1 466 83.0
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-215 753.1 467 82.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.3e-215 752.3 492 81.3
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 4.0e-215 751.5 465 83.2
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 4.0e-215 751.5 467 82.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 6.8e-215 750.7 463 82.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.0e-214 749.2 463 83.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 3.4e-214 748.4 465 81.7
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 5.8e-214 747.7 466 82.8
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 9.8e-214 746.9 462 81.8
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.8e-214 746.9 467 82.7
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.3e-213 746.5 490 79.8
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.3e-213 746.5 441 86.8
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.7e-213 746.1 473 81.8
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.9e-213 745.3 466 82.0
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.1e-212 743.4 466 81.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 4.1e-212 741.5 467 82.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.4e-212 741.1 466 82.2
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.6e-211 738.0 507 78.1
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.9e-210 734.9 443 85.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 8.6e-210 733.8 466 80.3
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.6e-209 731.1 442 85.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 4.4e-206 721.5 468 79.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.4e-204 715.7 465 78.5
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 3.2e-204 715.3 466 80.5
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 4.1e-204 714.9 420 86.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 8.6e-202 707.2 420 85.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.5e-201 706.4 466 78.1
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 3.3e-201 705.3 420 84.8
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.2e-198 696.8 435 83.0
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.8e-197 691.8 465 75.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 8.4e-197 690.6 443 78.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 4.3e-193 678.3 467 74.1
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 6.4e-189 664.5 466 73.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 9.6e-185 650.6 465 70.3
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.8e-184 648.3 465 70.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.5e-182 641.7 465 71.6
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 2.2e-181 639.4 466 73.6
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.1e-180 637.1 422 76.8
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-180 637.1 381 85.8
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 4.2e-180 635.2 626 58.6
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 5.6e-177 624.8 382 82.5
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 7.4e-177 624.4 424 74.3
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 6.9e-175 617.8 380 82.9
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.2e-173 612.8 435 73.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.8e-173 612.1 445 71.2
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.2e-172 609.0 418 73.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 8.7e-170 600.9 423 71.4
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.3e-168 597.0 391 77.7
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 3.1e-159 565.8 452 70.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 7.7e-158 561.2 351 83.2
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 4.4e-153 545.4 305 93.8
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.7e-144 515.8 442 66.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-143 514.2 466 62.2
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 7.2e-140 501.5 301 83.1
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.1e-135 487.6 469 60.8
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.1e-132 477.6 299 81.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.1e-131 473.4 352 67.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.9e-125 453.0 287 82.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.6e-121 439.9 260 83.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.5e-116 424.1 498 47.2
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.6e-116 422.2 343 67.9
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.3e-112 411.0 246 84.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.6e-107 392.9 245 83.7
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.5e-76 290.4 215 68.8
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 5.6e-76 289.3 298 57.7
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.2e-71 273.1 172 77.9
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-68 263.5 232 60.8
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.8e-58 231.1 466 38.0
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 3.8e-56 223.4 142 79.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 4.3e-52 209.9 119 92.4
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.3e-51 208.4 193 56.0
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.3e-51 208.4 145 76.6
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.3e-43 181.8 150 64.7
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.7e-43 181.4 145 64.8
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 5.0e-32 143.3 109 73.4
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-29 135.2 79 77.2
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 9.7e-28 129.0 101 71.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.4e-26 125.2 78 82.1
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 2.6e-25 120.9 69 87.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.5e-25 120.2 87 72.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.5e-24 116.3 87 70.1
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 6.1e-22 109.8 71 70.4
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.7e-19 101.7 76 73.7
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-18 97.8 63 82.5
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 5.9e-17 93.2 88 62.5
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.2e-15 87.0 53 83.0
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.7e-14 83.6 55 80.0
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.5e-12 78.6 58 69.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 4.8e-11 73.6 141 34.8
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 7.7e-09 66.2 93 47.3
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.1e-07 62.4 39 79.5


User provided reference genes

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