Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255481 Rosa chinensis HOM05D002764 ORTHO05D002960 1.4e-50 202.6 102 100.0
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 3.0e-32 141.7 83 92.8
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 4.4e-31 137.9 83 89.2
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 4.4e-31 137.9 83 89.2
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 4.8e-30 134.4 83 88.0
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 8.3e-30 133.7 83 86.7
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 1.4e-29 132.9 83 84.3
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.4e-29 132.9 83 85.5
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 9.1e-29 130.2 83 84.3
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 1.6e-28 129.4 83 84.3
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 2.0e-28 129.0 83 81.9
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 2.0e-28 129.0 83 83.1
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 4.5e-28 127.9 83 81.9
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 5.9e-28 127.5 83 81.9
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 5.9e-28 127.5 83 81.9
Haze_05179 Corylus avellana HOM05D002764 ORTHO05D002960 5.9e-28 127.5 83 81.9
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 5.9e-28 127.5 84 84.5
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 5.9e-28 127.5 84 83.3
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 7.7e-28 127.1 81 82.7
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 7.7e-28 127.1 83 81.9
Gohir.A12G051200 Gossypium hirsutum HOM05D002764 ORTHO05D002960 2.3e-27 125.6 83 80.7
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 2.3e-27 125.6 83 80.7
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 2.3e-27 125.6 83 80.7
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 5.0e-27 124.4 83 79.5
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 6.5e-27 124.0 83 78.3
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 8.6e-27 123.6 81 80.2
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 1.1e-26 123.2 81 79.0
MELO3C006994.2 Cucumis melo HOM05D002764 ORTHO05D002960 1.9e-26 122.5 81 79.0
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 2.5e-26 122.1 83 77.1
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 4.2e-26 121.3 83 77.1
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 4.2e-26 121.3 83 77.1
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 7.2e-26 120.6 83 74.7
RcHm_v2.0_Chr6g0246611 Rosa chinensis HOM05D002764 ORTHO05D002960 7.2e-26 120.6 83 83.1
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 7.2e-26 120.6 83 74.7
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 9.5e-26 120.2 83 75.9
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 9.5e-26 120.2 83 79.5
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 9.5e-26 120.2 81 76.5
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 1.2e-25 119.8 85 77.6
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 1.2e-25 119.8 83 78.3
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 1.2e-25 119.8 83 77.1
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 1.6e-25 119.4 81 72.8
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 1.6e-25 119.4 83 75.9
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 2.1e-25 119.0 83 75.9
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 2.1e-25 119.0 83 74.7
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 2.1e-25 119.0 84 77.4
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 2.8e-25 118.6 83 74.7
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 4.7e-25 117.9 83 75.9
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 4.7e-25 117.9 83 74.7
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 6.1e-25 117.5 83 74.7
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 6.1e-25 117.5 83 74.7
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 6.1e-25 117.5 83 73.5
Lj2A340G20 Lonicera japonica HOM05D002764 ORTHO05D002960 6.1e-25 117.5 82 74.4
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 8.0e-25 117.1 83 74.7
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 1.0e-24 116.7 83 71.1
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 1.4e-24 116.3 83 74.7
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 1.4e-24 116.3 83 72.3
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 1.4e-24 116.3 83 72.3
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 1.4e-24 116.3 83 72.3
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 1.8e-24 115.9 83 74.7
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 3.0e-24 115.2 85 69.4
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 4.0e-24 114.8 81 67.9
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 4.0e-24 114.8 83 69.9
Sabra03G0114300 Salix brachista HOM05D002764 ORTHO05D002960 4.0e-24 114.8 82 75.6
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 4.0e-24 114.8 83 72.3
AUR62007725 Chenopodium quinoa HOM05D002764 ORTHO05D002960 6.8e-24 114.0 83 72.3
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 6.8e-24 114.0 83 72.3
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 6.8e-24 114.0 83 71.1
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 8.9e-24 113.6 83 69.9
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 1.2e-23 113.2 80 67.5
Hund21012 Selenicereus undatus HOM05D002764 ORTHO05D002960 2.0e-23 112.5 83 69.9
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 2.6e-23 112.1 80 66.2
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 2.6e-23 112.1 80 66.2
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 2.6e-23 112.1 80 66.2
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 2.6e-23 112.1 80 66.2
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 4.4e-23 111.3 81 71.6
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 4.4e-23 111.3 81 66.7
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 5.7e-23 110.9 83 71.1
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 7.5e-23 110.5 80 65.0
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 9.8e-23 110.2 83 71.1
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 9.8e-23 110.2 86 62.8
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 9.8e-23 110.2 81 65.4
Oeu021869.2 Olea europaea HOM05D002764 ORTHO05D002960 1.3e-22 109.8 85 63.5
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 1.3e-22 109.8 83 69.9
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 2.2e-22 109.0 81 69.1
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 2.2e-22 109.0 80 63.8
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 2.2e-22 109.0 86 61.6
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 2.8e-22 108.6 83 65.1
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 2.8e-22 108.6 83 65.1
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 3.7e-22 108.2 76 69.7
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 3.7e-22 108.2 83 68.7
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 4.9e-22 107.8 76 69.7
RcHm_v2.0_Chr6g0255501 Rosa chinensis HOM05D002764 ORTHO05D002960 4.9e-22 107.8 86 75.6
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.3e-22 107.5 76 68.4
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 6.3e-22 107.5 76 68.4
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 6.3e-22 107.5 83 66.3
CAN.G1213.3 Capsicum annuum HOM05D002764 ORTHO05D002960 1.1e-21 106.7 85 64.7
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 1.1e-21 106.7 83 66.3
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 1.4e-21 106.3 81 67.9
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 1.8e-21 105.9 83 65.1
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 3.1e-21 105.1 78 69.2
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 4.1e-21 104.8 83 65.1
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 9.2e-21 103.6 81 66.7
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 5.9e-20 100.9 78 67.9
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 1.0e-19 100.1 77 68.8
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 1.1e-18 96.7 83 59.0
RcHm_v2.0_Chr1g0328971 Rosa chinensis HOM05D002764 ORTHO05D002960 1.5e-18 96.3 58 87.9
RcHm_v2.0_Chr2g0116291 Rosa chinensis HOM05D002764 ORTHO05D002960 1.5e-18 96.3 62 83.9
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 1.5e-18 96.3 83 60.2
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.9e-18 95.9 140 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 5.6e-18 94.4 78 62.8
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 1.2e-17 93.2 86 58.1
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 1.6e-17 92.8 77 63.6
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.4e-16 89.7 83 56.6
unitig_26.g9498 Utricularia gibba HOM05D002764 ORTHO05D002960 9.8e-15 83.6 71 62.0
QL11p010613 Quercus lobata HOM05D002764 ORTHO05D002960 1.3e-14 83.2 71 67.6
CDE10G1113 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 2.4e-13 79.0 47 83.0
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 7.0e-13 77.4 83 54.2
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea HOM05D002764 ORTHO05D002960 1.2e-12 76.6 57 71.9
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea HOM05D002764 ORTHO05D002960 4.6e-12 74.7 57 70.2
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 6.0e-12 74.3 56 71.4
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea HOM05D002764 ORTHO05D002960 1.1e-10 70.1 57 64.9
CBR_g9158 Chara braunii HOM05D002764 ORTHO05D002960 2.1e-09 65.9 98 38.8
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 8.0e-09 63.9 55 60.0
Migut.N00293 Erythranthe guttata HOM05D002764 ORTHO05D002960 1.8e-08 62.8 78 46.2
Actinidia11363 Actinidia chinensis HOM05D002764 ORTHO05D002960 2.3e-08 62.4 78 37.2
CSS0027427 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 2.3e-08 62.4 78 38.5
MSTRG.24665 Avicennia marina HOM05D002764 ORTHO05D002960 6.8e-08 60.8 78 35.9
Dinv29815 Davidia involucrata HOM05D002764 ORTHO05D002960 8.9e-08 60.5 78 35.9
Oeu026618.1 Olea europaea HOM05D002764 ORTHO05D002960 1.5e-07 59.7 78 34.6
Cc03_g06020 Coffea canephora HOM05D002764 ORTHO05D002960 2.0e-07 59.3 78 38.5
Gorai.006G251700 Gossypium raimondii HOM05D002764 ORTHO05D002960 2.6e-07 58.9 78 37.2
CAN.G220.89 Capsicum annuum HOM05D002764 ORTHO05D002960 3.4e-07 58.5 78 37.2
Nitab4.5_0001051g0120 Nicotiana tabacum HOM05D002764 ORTHO05D002960 3.4e-07 58.5 73 39.7
Nitab4.5_0002709g0030 Nicotiana tabacum HOM05D002764 ORTHO05D002960 3.4e-07 58.5 73 39.7
Solyc09g090550.3 Solanum lycopersicum HOM05D002764 ORTHO05D002960 3.4e-07 58.5 78 37.2
Sopen09g033480 Solanum pennellii HOM05D002764 ORTHO05D002960 3.4e-07 58.5 78 37.2
PGSC0003DMG400017199 Solanum tuberosum HOM05D002764 ORTHO05D002960 3.4e-07 58.5 78 37.2
Thecc.04G262000 Theobroma cacao HOM05D002764 ORTHO05D002960 3.4e-07 58.5 78 35.9
EL10Ac3g04954 Beta vulgaris HOM05D002764 ORTHO05D002960 4.4e-07 58.2 78 38.5
Potri.008G170800 Populus trichocarpa HOM05D002764 ORTHO05D002960 4.4e-07 58.2 80 33.8
Rhsim02G0042900 Rhododendron simsii HOM05D002764 ORTHO05D002960 4.4e-07 58.2 78 34.6
Gohir.D09G229000 Gossypium hirsutum HOM05D002764 ORTHO05D002960 5.8e-07 57.8 78 35.9
Lj6A623T40 Lonicera japonica HOM05D002764 ORTHO05D002960 5.8e-07 57.8 78 35.9
Potri.010G067100 Populus trichocarpa HOM05D002764 ORTHO05D002960 5.8e-07 57.8 78 33.3
GSVIVG01027900001 Vitis vinifera HOM05D002764 ORTHO05D002960 5.8e-07 57.8 78 34.6
CsaV3_3G011790 Cucumis sativus L. HOM05D002764 ORTHO05D002960 7.5e-07 57.4 81 29.6
SGA_v2.0_scaffold43G16201 Striga asiatica HOM05D002764 ORTHO05D002960 9.8e-07 57.0 78 35.9
Manes.15G044500 Manihot esculenta HOM05D002764 ORTHO05D002960 1.3e-06 56.6 85 32.9
Sabra08G0130600 Salix brachista HOM05D002764 ORTHO05D002960 1.3e-06 56.6 78 33.3
AUR62002182 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.7e-06 56.2 78 35.9
AUR62015528 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.7e-06 56.2 78 37.2
Peaxi162Scf00033g02834 Petunia axillaris HOM05D002764 ORTHO05D002960 1.7e-06 56.2 78 37.2
Haze_11445 Corylus avellana HOM05D002764 ORTHO05D002960 2.2e-06 55.8 77 35.1
DCAR_024283 Daucus carota HOM05D002764 ORTHO05D002960 2.2e-06 55.8 78 34.6
Nn3g19748 Nelumbo nucifera HOM05D002764 ORTHO05D002960 2.2e-06 55.8 73 37.0
Duzib151G0425 Durio zibethinus HOM05D002764 ORTHO05D002960 2.9e-06 55.5 78 34.6
MBI07_g18712_MAGBIO Magnolia biondii HOM05D002764 ORTHO05D002960 2.9e-06 55.5 73 37.0
Manes.03G160300 Manihot esculenta HOM05D002764 ORTHO05D002960 3.7e-06 55.1 78 33.3
CiPaw.01G179300 Carya illinoinensis HOM05D002764 ORTHO05D002960 4.9e-06 54.7 78 32.1
Eucgr.H00135 Eucalyptus grandis HOM05D002764 ORTHO05D002960 4.9e-06 54.7 78 34.6
Prupe.1G046200 Prunus persica HOM05D002764 ORTHO05D002960 4.9e-06 54.7 78 32.1
Sabra10G0040400 Salix brachista HOM05D002764 ORTHO05D002960 4.9e-06 54.7 78 32.1
Cfa014772 Carpinus fangiana HOM05D002764 ORTHO05D002960 6.4e-06 54.3 77 33.8
vmacro15471 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 6.4e-06 54.3 78 30.8
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 8.3e-06 53.9 78 33.3
HanXRQChr01g0022911 Helianthus annuus HOM05D002764 ORTHO05D002960 8.3e-06 53.9 78 34.6


User provided reference genes

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