Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.5e-160 567.4 295 100.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 6.5e-152 540.8 305 93.8
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 8.0e-134 480.7 285 90.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.5e-132 474.2 285 88.8
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.5e-132 474.2 285 88.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-131 473.0 285 87.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.7e-131 471.9 285 88.4
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.1e-130 468.4 286 89.2
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.6e-126 455.3 285 84.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.0e-124 449.5 285 83.2
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.8e-123 445.7 285 81.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.8e-123 445.7 284 82.0
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 4.8e-123 444.9 285 82.1
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 8.3e-123 444.1 278 83.8
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.4e-122 442.6 285 81.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 3.1e-122 442.2 285 81.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 4.1e-122 441.8 284 82.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 5.4e-122 441.4 284 81.3
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 5.4e-122 441.4 284 81.3
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 5.4e-122 441.4 285 80.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 5.4e-122 441.4 285 81.4
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 7.0e-122 441.0 285 81.4
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 7.0e-122 441.0 285 81.4
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 7.0e-122 441.0 284 81.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 7.0e-122 441.0 285 81.1
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.2e-121 440.3 285 81.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.7e-121 439.1 285 81.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.5e-121 438.7 286 80.8
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 7.7e-121 437.6 285 80.7
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.0e-120 437.2 284 80.6
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.3e-120 436.8 282 79.8
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.3e-120 436.0 283 79.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 2.3e-120 436.0 285 80.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.3e-120 436.0 285 80.4
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.3e-120 436.0 285 80.0
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.9e-120 435.6 285 78.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 2.9e-120 435.6 285 78.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.9e-120 435.6 285 80.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.9e-120 435.6 285 80.0
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.9e-120 435.6 281 82.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 3.8e-120 435.3 285 80.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 5.0e-120 434.9 282 81.6
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.0e-120 434.9 282 80.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.0e-120 434.9 285 79.3
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 5.0e-120 434.9 286 80.1
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 6.6e-120 434.5 285 78.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 6.6e-120 434.5 285 79.6
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 6.6e-120 434.5 285 80.4
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 6.6e-120 434.5 285 80.4
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 8.6e-120 434.1 285 79.6
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 8.6e-120 434.1 286 80.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.6e-120 434.1 285 80.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 8.6e-120 434.1 282 81.2
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.1e-119 433.7 283 79.9
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-119 433.7 285 78.9
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.1e-119 433.7 285 81.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.5e-119 433.3 285 80.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.5e-119 433.3 285 79.3
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.5e-119 433.3 285 79.6
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.9e-119 433.0 285 78.6
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.9e-119 433.0 286 80.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.9e-119 433.0 284 79.6
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.5e-119 432.6 285 79.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.3e-119 432.2 285 80.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 4.2e-119 431.8 286 79.7
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 5.5e-119 431.4 285 79.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.5e-119 431.4 285 80.0
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 7.2e-119 431.0 285 78.6
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 7.2e-119 431.0 285 78.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.6e-118 429.9 285 78.9
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-118 429.5 285 78.9
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-118 429.5 285 78.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.1e-118 429.5 285 80.0
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 2.8e-118 429.1 285 77.5
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 3.6e-118 428.7 285 80.0
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 4.7e-118 428.3 282 79.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.7e-118 428.3 282 80.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.7e-118 428.3 285 78.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.7e-118 428.3 285 78.6
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.7e-118 428.3 282 79.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.1e-118 427.9 284 78.2
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 6.1e-118 427.9 285 78.6
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 6.1e-118 427.9 285 78.6
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 6.1e-118 427.9 284 78.2
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-117 427.2 287 79.4
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-117 426.8 284 78.5
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.8e-117 426.4 285 78.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.8e-117 426.4 282 79.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 5.2e-117 424.9 285 78.6
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 8.9e-117 424.1 275 79.6
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 8.9e-117 424.1 285 77.5
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 8.9e-117 424.1 285 77.2
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.2e-116 423.7 285 79.3
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.0e-116 422.9 285 75.4
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.0e-116 422.9 284 77.5
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.0e-116 422.9 285 77.2
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.0e-116 422.9 285 76.8
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.6e-116 422.5 285 77.5
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 7.5e-116 421.0 285 76.5
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.7e-115 418.7 285 77.5
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-114 416.8 285 76.5
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.8e-114 416.4 285 77.9
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.3e-112 410.2 285 75.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 8.6e-112 407.5 286 75.9
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.3e-111 405.6 262 80.9
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.1e-110 402.9 260 81.5
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 3.6e-110 402.1 261 81.2
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.7e-110 401.7 283 74.2
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.8e-108 394.8 260 78.5
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.5e-108 394.4 282 73.0
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.2e-107 392.9 285 71.2
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 3.7e-107 392.1 283 72.1
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.4e-106 390.2 281 71.9
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 6.0e-105 384.8 261 76.2
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.0e-104 384.0 283 70.3
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 8.6e-104 380.9 282 69.5
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 9.5e-103 377.5 282 68.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.7e-102 375.2 300 68.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.2e-101 371.7 283 68.6
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.8e-100 368.2 246 79.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 5.8e-100 368.2 286 68.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.3e-99 367.1 284 67.3
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.2e-98 362.5 285 70.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.3e-87 325.5 223 74.0
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.6e-86 322.4 285 61.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.4e-74 283.9 271 60.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.4e-74 283.1 170 84.1
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.8e-69 266.9 161 83.9
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 6.9e-69 265.0 329 47.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.7e-65 253.1 161 78.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.8e-61 240.4 251 58.6
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.9e-58 230.3 172 70.3
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 4.2e-58 229.2 241 57.3
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 8.7e-56 221.5 142 78.9
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-44 184.5 285 43.5
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.7e-40 168.7 126 74.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.3e-38 164.5 105 79.0
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 4.4e-31 139.4 150 56.0
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.9e-20 102.4 67 74.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.3e-19 101.3 64 78.1
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.4e-15 86.7 54 77.8
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.8e-14 82.8 55 80.0
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-12 78.2 56 64.3
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 6.5e-11 72.4 141 34.8
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.5e-10 71.2 65 61.5
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-09 68.2 55 61.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-08 64.7 35 80.0


User provided reference genes

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