Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 3.0e-56 222.2 175 100.0
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 3.6e-49 198.7 124 91.1
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 2.0e-47 193.0 131 80.2
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 3.4e-47 192.2 124 88.7
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 3.4e-47 192.2 124 88.7
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 3.4e-47 192.2 124 88.7
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 9.8e-47 190.7 124 87.9
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 7.0e-45 184.5 126 81.0
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 2.7e-44 182.6 114 87.7
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 1.7e-43 179.9 125 76.8
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 2.3e-43 179.5 124 85.5
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 6.6e-43 177.9 125 77.6
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 1.5e-42 176.8 126 77.8
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 3.3e-42 175.6 124 77.4
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 5.6e-42 174.9 124 77.4
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 1.2e-41 173.7 124 77.4
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 3.6e-41 172.2 124 77.4
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 4.7e-41 171.8 124 78.2
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 4.7e-41 171.8 124 78.2
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 4.7e-41 171.8 124 78.2
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 8.0e-41 171.0 177 59.3
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 1.0e-40 170.6 125 78.4
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.4e-40 170.2 124 75.0
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 2.3e-40 169.5 124 75.0
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 3.0e-40 169.1 125 77.6
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 3.0e-40 169.1 124 77.4
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 6.8e-40 167.9 125 73.6
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 8.9e-40 167.5 124 75.8
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 8.9e-40 167.5 122 72.1
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 1.2e-39 167.2 131 76.3
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.5e-39 166.8 127 72.4
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 2.0e-39 166.4 124 75.0
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 3.4e-39 165.6 124 74.2
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 4.4e-39 165.2 124 71.8
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 4.4e-39 165.2 124 73.4
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 5.7e-39 164.9 132 72.0
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 7.5e-39 164.5 124 74.2
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 7.5e-39 164.5 128 72.7
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 7.5e-39 164.5 128 73.4
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 7.5e-39 164.5 124 72.6
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 1.3e-38 163.7 128 73.4
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.7e-38 163.3 128 74.2
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 6.4e-38 161.4 131 69.5
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 6.4e-38 161.4 123 73.2
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.4e-37 159.5 118 74.6
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 3.2e-37 159.1 120 75.8
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 4.1e-37 158.7 115 74.8
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 5.4e-37 158.3 167 56.9
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 7.0e-37 157.9 116 76.7
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 9.2e-37 157.5 130 70.0
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 9.2e-37 157.5 128 72.7
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 9.2e-37 157.5 126 69.8
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 1.2e-36 157.1 124 71.8
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.6e-36 156.8 116 75.9
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 2.0e-36 156.4 115 75.7
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 2.0e-36 156.4 115 75.7
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 4.6e-36 155.2 127 70.1
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 4.6e-36 155.2 114 81.6
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 5.9e-36 154.8 125 68.0
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 5.9e-36 154.8 126 69.0
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 7.8e-36 154.5 116 77.6
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 1.3e-35 153.7 126 68.3
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 1.3e-35 153.7 115 74.8
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 2.9e-35 152.5 126 68.3
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 5.0e-35 151.8 128 65.6
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 6.6e-35 151.4 124 68.5
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 8.6e-35 151.0 126 68.3
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 1.1e-34 150.6 125 68.0
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 1.1e-34 150.6 119 69.7
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.5e-34 150.2 118 71.2
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 2.5e-34 149.4 91 84.6
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 3.3e-34 149.1 125 67.2
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 4.3e-34 148.7 127 68.5
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 4.3e-34 148.7 127 67.7
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 4.3e-34 148.7 127 67.7
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 4.3e-34 148.7 127 67.7
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 4.3e-34 148.7 129 65.9
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 5.6e-34 148.3 127 66.9
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 9.5e-34 147.5 118 68.6
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.2e-33 147.1 123 68.3
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.6e-33 146.7 130 66.2
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 1.6e-33 146.7 125 67.2
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 2.8e-33 146.0 91 82.4
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 2.8e-33 146.0 117 74.4
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 3.6e-33 145.6 134 63.4
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 4.7e-33 145.2 123 67.5
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 4.7e-33 145.2 116 69.8
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 6.2e-33 144.8 126 65.1
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 6.2e-33 144.8 115 68.7
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 1.0e-32 144.1 128 71.1
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.0e-32 144.1 122 67.2
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 6.8e-32 141.4 126 69.8
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 6.8e-32 141.4 126 69.8
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 2.0e-31 139.8 115 69.6
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 2.0e-31 139.8 150 57.3
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 3.4e-31 139.0 131 67.2
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 3.4e-31 139.0 114 71.9
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 3.4e-31 139.0 130 65.4
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 7.5e-31 137.9 81 87.7
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 1.3e-30 137.1 122 63.9
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 2.9e-30 136.0 122 63.1
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 4.1e-29 132.1 78 85.9
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 5.4e-29 131.7 79 84.8
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 7.0e-29 131.3 124 62.9
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 7.0e-29 131.3 180 50.0
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 7.0e-29 131.3 76 89.5
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 2.7e-28 129.4 77 84.4
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 1.0e-27 127.5 117 60.7
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 2.3e-27 126.3 111 65.8
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 2.3e-27 126.3 132 59.1
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 6.6e-27 124.8 92 73.9
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 5.6e-26 121.7 89 73.0
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 9.5e-26 120.9 102 68.6
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 6.2e-25 118.2 76 81.6
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.4e-24 117.1 141 52.5
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 4.0e-24 115.5 112 59.8
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 1.2e-23 114.0 133 53.4
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 1.3e-22 110.5 117 58.1
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.9e-22 109.4 109 57.8
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.9e-22 109.4 252 36.5
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 1.9e-18 96.7 85 64.7
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 4.3e-18 95.5 88 62.5
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 9.5e-18 94.4 89 61.8
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 4.1e-13 79.0 77 58.4
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 1.3e-11 73.9 75 56.0
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 6.6e-11 71.6 53 67.9
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 8.6e-11 71.2 52 73.1
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 6.2e-09 65.1 47 76.6
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 1.4e-08 63.9 40 85.0
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.5e-07 60.5 67 49.3
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 5.8e-07 58.5 48 62.5


User provided reference genes

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