Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255091 Rosa chinensis HOM05D004476 ORTHO05D002200 1.9e-40 168.7 84 100.0
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 1.7e-28 129.0 89 78.7
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 2.2e-28 128.6 89 77.5
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.2e-28 128.6 89 77.5
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.2e-28 128.6 89 77.5
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 3.7e-28 127.9 89 75.3
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.2e-27 124.8 86 77.9
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 7.0e-27 123.6 89 75.3
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 7.0e-27 123.6 89 75.3
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.6e-26 122.5 89 74.2
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 1.6e-26 122.5 89 74.2
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 3.5e-26 121.3 89 73.0
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 4.6e-26 120.9 89 71.9
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 1.0e-25 119.8 89 69.7
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 1.0e-25 119.8 89 73.0
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 1.3e-25 119.4 89 69.7
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 1.7e-25 119.0 89 71.9
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 1.7e-25 119.0 89 71.9
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 1.7e-25 119.0 89 70.8
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 1.7e-25 119.0 89 73.0
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 2.3e-25 118.6 89 71.9
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 3.0e-25 118.2 89 68.5
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 3.9e-25 117.9 89 70.8
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 3.9e-25 117.9 89 70.8
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 5.0e-25 117.5 89 71.9
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 8.6e-25 116.7 89 68.5
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 8.6e-25 116.7 89 70.8
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 8.6e-25 116.7 89 68.5
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.1e-24 116.3 89 71.9
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 1.1e-24 116.3 89 70.8
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 1.1e-24 116.3 89 69.7
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 1.9e-24 115.5 89 70.8
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 1.9e-24 115.5 89 70.8
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 3.3e-24 114.8 89 68.5
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 4.3e-24 114.4 89 68.5
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 4.3e-24 114.4 89 67.4
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 4.3e-24 114.4 89 67.4
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 4.3e-24 114.4 89 68.5
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 5.6e-24 114.0 89 69.7
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 5.6e-24 114.0 89 67.4
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 7.3e-24 113.6 89 69.7
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 7.3e-24 113.6 89 67.4
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 7.3e-24 113.6 89 68.5
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 9.5e-24 113.2 89 68.5
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 9.5e-24 113.2 89 68.5
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.2e-23 112.8 89 66.3
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 1.2e-23 112.8 89 67.4
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 1.2e-23 112.8 89 67.4
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.1e-23 112.1 89 66.3
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 2.1e-23 112.1 89 66.3
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 2.1e-23 112.1 89 66.3
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 3.6e-23 111.3 89 67.4
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 3.6e-23 111.3 89 65.2
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 4.7e-23 110.9 89 66.3
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 4.7e-23 110.9 89 67.4
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 6.2e-23 110.5 89 69.7
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 6.2e-23 110.5 89 64.0
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 6.2e-23 110.5 89 65.2
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 6.2e-23 110.5 89 65.2
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 6.2e-23 110.5 89 65.2
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 8.1e-23 110.2 89 65.2
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 8.1e-23 110.2 89 67.4
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 1.1e-22 109.8 89 64.0
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.1e-22 109.8 89 66.3
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 1.1e-22 109.8 89 65.2
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 1.4e-22 109.4 89 65.2
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 1.4e-22 109.4 89 65.2
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 1.4e-22 109.4 86 68.6
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 2.3e-22 108.6 89 64.0
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 2.3e-22 108.6 89 64.0
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 2.3e-22 108.6 89 64.0
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 2.3e-22 108.6 89 64.0
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 2.3e-22 108.6 89 62.9
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 3.1e-22 108.2 85 67.1
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 3.1e-22 108.2 89 62.9
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 3.1e-22 108.2 89 62.9
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 3.1e-22 108.2 89 65.2
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 3.1e-22 108.2 89 62.9
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-22 107.8 89 65.2
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-22 107.8 89 62.9
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-22 107.8 89 65.2
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 4.0e-22 107.8 89 65.2
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 5.2e-22 107.5 89 62.9
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 5.2e-22 107.5 89 62.9
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 5.2e-22 107.5 89 67.4
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 5.2e-22 107.5 89 67.4
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 5.2e-22 107.5 89 69.7
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 6.8e-22 107.1 89 62.9
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 8.9e-22 106.7 89 62.9
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 8.9e-22 106.7 89 67.4
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 1.2e-21 106.3 89 62.9
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 1.2e-21 106.3 89 62.9
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 1.2e-21 106.3 89 61.8
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 1.2e-21 106.3 89 66.3
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 1.2e-21 106.3 89 66.3
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 1.5e-21 105.9 89 64.0
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 2.6e-21 105.1 89 62.9
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 3.4e-21 104.8 89 61.8
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 3.4e-21 104.8 89 60.7
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 3.4e-21 104.8 89 64.0
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 3.4e-21 104.8 89 65.2
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 4.4e-21 104.4 89 64.0
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 7.5e-21 103.6 89 61.8
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 9.9e-21 103.2 89 61.8
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 9.9e-21 103.2 86 64.0
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 9.9e-21 103.2 89 61.8
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 9.9e-21 103.2 88 62.5
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 9.9e-21 103.2 89 61.8
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 1.3e-20 102.8 89 60.7
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 1.7e-20 102.4 89 60.7
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 2.9e-20 101.7 81 67.9
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 2.9e-20 101.7 89 58.4
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 3.7e-20 101.3 89 61.8
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 3.7e-20 101.3 84 63.1
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 3.7e-20 101.3 89 61.8
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 6.4e-20 100.5 87 60.9
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 1.9e-19 99.0 89 58.4
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 1.9e-19 99.0 89 61.8
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 2.4e-19 98.6 89 58.4
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 2.4e-19 98.6 89 58.4
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 2.4e-19 98.6 89 58.4
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 2.4e-19 98.6 89 59.6
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 3.2e-19 98.2 89 59.6
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 4.1e-19 97.8 89 61.8
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 4.1e-19 97.8 86 61.6
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 5.4e-19 97.4 89 57.3
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 5.4e-19 97.4 89 58.4
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 7.1e-19 97.1 90 61.1
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 1.2e-18 96.3 78 65.4
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 2.7e-18 95.1 89 56.2
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 2.7e-18 95.1 89 56.2
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 2.7e-18 95.1 89 56.2
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 3.5e-18 94.7 86 57.0
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 4.6e-18 94.4 85 54.1
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 1.3e-17 92.8 82 59.8
Eucgr.F03858 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.7e-17 92.4 89 58.4
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 3.0e-17 91.7 78 61.5
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 3.0e-17 91.7 89 53.9
Pp3c12_21250 Physcomitrium patens HOM05D004476 ORTHO05D002200 8.6e-17 90.1 85 58.8
Mapoly0038s0099 Marchantia polymorpha HOM05D004476 ORTHO05D002200 2.5e-16 88.6 85 56.5
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 3.3e-16 88.2 92 54.3
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 5.6e-16 87.4 78 61.5
Zm00001eb389280 Zea mays HOM05D004476 ORTHO05D002200 9.5e-16 86.7 77 58.4
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 6.2e-15 84.0 76 59.2
Os02g0176400 Oryza sativa ssp. japonica HOM05D004476 ORTHO05D002200 1.4e-14 82.8 77 62.3
CBR_g46719 Chara braunii HOM05D004476 ORTHO05D002200 3.1e-14 81.6 82 53.7
Zm00001eb206870 Zea mays HOM05D004476 ORTHO05D002200 3.1e-14 81.6 77 61.0
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 6.4e-12 73.9 85 51.8
Dinv25480 Davidia involucrata HOM05D000871 ORTHO05D000770 7.1e-11 70.5 38 84.2
SMO347G0074 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 1.3e-09 66.2 78 43.6
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 3.0e-09 65.1 63 55.6
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 5.1e-09 64.3 81 46.9
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 1.9e-08 62.4 67 52.2
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 4.3e-08 61.2 42 76.2
SMO340G0185 Selaginella moellendorffii HOM05D005022 ORTHO05D002200 7.3e-08 60.5 81 40.7
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 2.1e-07 58.9 43 72.1
Pp3c7_15070 Physcomitrium patens HOM05D005022 ORTHO05D002200 6.2e-07 57.4 81 40.7
CBR_g61519 Chara braunii HOM05D005022 ORTHO05D002200 1.1e-06 56.6 85 44.7
Pp3c18_10200 Physcomitrium patens HOM05D005022 ORTHO05D002200 1.4e-06 56.2 82 43.9
Cre01.g031600 Chlamydomonas reinhardtii HOM05D005022 ORTHO05D002200 4.0e-06 54.7 76 46.1
Mapoly0001s0441 Marchantia polymorpha HOM05D005022 ORTHO05D002200 5.2e-06 54.3 82 37.8
PRCOL_00000727 Prasinoderma coloniale HOM05D005022 ORTHO05D002200 6.9e-06 53.9 81 42.0
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 9.0e-06 53.5 43 60.5


User provided reference genes

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