Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-244 849.4 418 100.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 7.6e-239 830.1 418 97.6
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.0e-235 819.7 418 95.2
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.2e-233 810.4 434 91.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-232 809.7 418 93.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-231 805.4 434 91.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.8e-230 801.2 434 91.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 5.1e-219 764.2 418 88.3
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 8.2e-217 756.9 418 87.1
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.2e-215 753.1 418 86.8
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.1e-204 715.7 362 94.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.7e-203 710.7 418 82.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.7e-203 710.7 417 81.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 3.3e-202 708.4 417 81.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.3e-202 708.0 419 80.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.7e-202 707.6 419 81.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 7.4e-202 707.2 418 80.9
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 7.4e-202 707.2 418 81.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 9.7e-202 706.8 417 81.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-201 706.4 417 81.3
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.3e-201 706.4 417 81.1
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.7e-201 706.1 418 80.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-201 706.1 418 82.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 8.2e-201 703.7 419 80.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.4e-200 702.2 418 79.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.1e-200 701.4 416 79.8
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.1e-200 701.4 419 79.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 4.1e-200 701.4 418 80.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 6.9e-200 700.7 414 80.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 9.1e-200 700.3 416 79.6
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 9.1e-200 700.3 417 81.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.2e-199 699.9 418 78.7
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.5e-199 699.5 416 79.3
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.5e-199 699.5 419 80.0
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.4e-199 698.4 417 78.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.9e-199 697.6 418 79.2
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 7.7e-199 697.2 416 79.3
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 7.7e-199 697.2 416 80.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 7.7e-199 697.2 439 78.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 7.7e-199 697.2 417 79.9
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.0e-198 696.8 418 80.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.3e-198 696.4 416 79.3
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 418 79.7
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.7e-198 696.0 417 79.4
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.7e-198 696.0 416 79.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-198 695.7 418 79.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.9e-198 695.3 440 76.4
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.9e-198 695.3 418 79.4
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.9e-198 695.3 419 79.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 3.8e-198 694.9 414 79.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 3.8e-198 694.9 415 79.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 5.0e-198 694.5 414 80.0
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.5e-198 694.1 418 79.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 8.5e-198 693.7 416 79.3
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.4e-197 693.0 419 79.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.4e-197 693.0 419 78.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.9e-197 692.6 417 79.1
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.9e-197 692.6 416 79.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.5e-197 692.2 417 79.4
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.2e-197 691.8 416 78.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.5e-197 691.0 419 78.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 7.2e-197 690.6 416 79.1
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 7.2e-197 690.6 416 78.6
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 7.2e-197 690.6 416 78.4
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.1e-196 689.1 415 78.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.1e-196 689.1 416 78.1
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 77.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.6e-196 688.3 416 79.8
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.7e-196 688.0 417 78.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 7.9e-196 687.2 414 78.7
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.4e-195 686.4 418 79.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 3.0e-195 685.3 419 77.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.9e-195 684.9 416 78.1
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.9e-195 684.9 419 78.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 5.2e-195 684.5 417 77.9
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 5.2e-195 684.5 418 78.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 78.1
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 8.8e-195 683.7 419 76.8
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 8.8e-195 683.7 418 78.2
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.1e-194 683.3 417 78.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.1e-194 683.3 421 78.6
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.5e-194 682.9 416 79.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.5e-194 682.9 416 78.1
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.5e-194 682.9 434 77.0
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 9.7e-194 680.2 414 77.8
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.3e-193 679.9 415 78.1
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.7e-193 679.5 435 76.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-193 679.5 418 78.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 78.2
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 6.3e-193 677.6 412 77.4
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.8e-192 676.0 418 77.0
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.4e-192 675.6 412 78.4
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.3e-192 674.5 417 78.2
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 5.3e-192 674.5 417 77.0
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.5e-191 671.8 416 76.9
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.9e-191 671.0 416 77.2
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.3e-190 669.8 431 75.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.9e-190 668.7 416 75.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 5.0e-190 667.9 406 80.5
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 8.5e-190 667.2 416 76.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.2e-189 665.2 416 75.7
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.2e-188 663.3 415 74.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-188 662.9 418 76.3
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-188 662.1 416 76.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.8e-187 659.4 417 75.1
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.7e-187 657.5 416 74.3
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-186 654.8 449 71.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.2e-185 650.6 416 74.8
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.0e-182 643.7 417 76.3
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 5.0e-182 641.3 457 68.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.0e-182 641.3 410 73.9
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 8.5e-182 640.6 415 73.0
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.5e-181 639.0 414 72.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.2e-181 638.6 412 73.5
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.1e-180 636.0 421 72.9
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.1e-180 636.0 412 73.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 6.1e-180 634.4 412 73.3
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.4e-179 633.3 360 83.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.4e-179 633.3 413 72.9
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 4.0e-179 631.7 417 74.8
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 8.8e-179 630.6 416 72.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.8e-179 630.6 411 72.7
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 9.8e-178 627.1 417 71.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.3e-177 626.7 417 73.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.3e-177 624.4 412 71.4
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.1e-176 622.1 420 71.2
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-175 620.2 411 73.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 5.0e-174 614.8 498 62.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 8.5e-174 614.0 371 79.0
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 8.5e-174 614.0 421 68.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.2e-173 610.9 415 72.3
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 4.9e-169 598.2 361 78.1
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.1e-168 595.1 413 68.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.3e-161 570.9 341 78.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 3.5e-159 565.5 341 78.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 6.6e-158 561.2 413 63.2
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.1e-156 556.2 415 62.2
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.0e-150 535.8 434 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.0e-147 525.4 410 61.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.2e-144 515.8 413 63.0
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 3.9e-142 508.8 411 57.9
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.2e-137 493.0 291 81.4
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.9e-137 492.7 426 55.6
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.6e-130 468.0 342 66.1
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.5e-122 442.2 315 69.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 9.9e-122 441.0 302 74.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.2e-113 413.3 223 86.1
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-111 407.5 291 68.4
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.4e-107 394.0 414 48.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 8.4e-105 384.8 498 41.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.4e-99 367.5 426 45.8
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 6.9e-99 365.2 403 47.4
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-97 360.1 235 73.6
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.9e-96 357.1 244 69.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.3e-93 345.9 198 81.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.3e-92 342.0 198 80.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.1e-75 286.6 230 64.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.3e-73 281.2 221 63.3
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.5e-64 249.2 162 75.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.4e-62 244.6 258 52.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-62 243.0 174 65.5
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.4e-59 232.6 151 74.2
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.7e-58 230.3 179 65.9
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.0e-57 226.1 229 53.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 3.3e-56 223.4 155 68.4
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-53 214.9 124 79.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-51 207.2 181 57.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.5e-50 203.0 128 76.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-49 199.5 337 38.0
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.3e-48 196.4 121 73.6
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.8e-46 189.1 343 37.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.0e-42 177.6 127 68.5
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.7e-36 156.8 122 61.5
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 6.0e-34 149.4 95 74.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.5e-29 134.8 88 72.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 6.4e-28 129.4 66 86.4
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-27 128.6 126 55.6
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.6e-26 123.2 71 80.3
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 7.6e-13 79.3 57 68.4
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 6.4e-12 76.3 87 42.5
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.4e-11 75.1 98 38.8
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.1e-10 71.2 59 67.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 5.6e-08 63.2 35 77.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.3e-07 62.0 42 66.7
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.8e-07 60.1 303 22.1


User provided reference genes

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