Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 7.2e-40 166.8 83 100.0
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 2.7e-39 164.9 83 98.8
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 9.7e-37 156.4 81 92.6
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 9.7e-37 156.4 81 92.6
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 9.7e-37 156.4 81 92.6
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.7e-36 155.6 83 91.6
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 2.2e-33 145.2 83 85.5
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 2.9e-33 144.8 81 87.7
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 8.5e-33 143.3 81 86.4
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 2.7e-31 138.3 83 79.5
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 6.1e-31 137.1 83 78.3
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 6.1e-31 137.1 83 80.7
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.8e-30 135.6 83 78.3
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.8e-30 135.6 82 78.0
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 3.0e-30 134.8 81 76.5
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.0e-30 134.8 80 80.0
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 5.1e-30 134.0 82 78.0
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 6.7e-30 133.7 80 77.5
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 6.7e-30 133.7 80 78.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 8.8e-30 133.3 80 78.8
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 8.8e-30 133.3 80 77.5
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.1e-29 132.9 80 78.8
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 1.1e-29 132.9 80 78.8
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 1.1e-29 132.9 83 77.1
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 1.1e-29 132.9 83 77.1
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.5e-29 132.5 80 78.8
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.5e-29 132.5 83 78.3
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 1.5e-29 132.5 83 77.1
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.5e-29 132.5 80 77.5
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.0e-29 132.1 83 78.3
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-29 131.7 83 74.7
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-29 131.7 83 74.7
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 2.6e-29 131.7 81 80.2
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 3.3e-29 131.3 83 74.7
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 3.3e-29 131.3 80 76.2
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 4.4e-29 131.0 80 78.8
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.4e-29 131.0 83 74.7
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 5.7e-29 130.6 80 77.5
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 5.7e-29 130.6 83 75.9
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 5.7e-29 130.6 83 74.7
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 7.4e-29 130.2 83 74.7
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 7.4e-29 130.2 80 77.5
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 9.7e-29 129.8 80 80.0
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 80.0
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 1.7e-28 129.0 82 74.4
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 2.2e-28 128.6 83 72.3
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 2.2e-28 128.6 82 75.6
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 2.8e-28 128.3 81 71.6
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 3.7e-28 127.9 82 74.4
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 3.7e-28 127.9 82 74.4
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 78.8
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 72.5
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 6.3e-28 127.1 83 72.3
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 8.2e-28 126.7 80 72.5
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 8.2e-28 126.7 84 71.4
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 1.1e-27 126.3 83 73.5
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 81 74.1
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 71.2
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 81 74.1
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 72.5
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 72.5
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 73.8
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 71.2
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.4e-27 125.2 81 72.8
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 69.9
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 3.1e-27 124.8 81 70.4
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 4.1e-27 124.4 81 70.4
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 76.2
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 70.0
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 7.7e-26 120.2 83 67.5
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 7.7e-26 120.2 80 66.2
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 71.2
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 5.0e-25 117.5 80 71.2
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 8.5e-25 116.7 80 66.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 71.2
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.9e-24 115.5 80 71.2
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 71.2
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.9e-24 115.5 80 71.2
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.5e-24 115.2 80 71.2
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 70.0
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 70.0
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 70.0
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 70.0
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 70.0
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 3.2e-24 114.8 81 70.4
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 4.2e-24 114.4 80 70.0
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 7.2e-24 113.6 80 68.8
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 7.2e-24 113.6 80 68.8
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 7.2e-24 113.6 80 68.8
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 9.4e-24 113.2 80 71.2
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 9.4e-24 113.2 80 70.0
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 2.1e-23 112.1 80 68.8
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 2.7e-23 111.7 80 68.8
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 6.1e-23 110.5 69 78.3
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 8.0e-23 110.2 80 67.5
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 1.1e-21 106.3 80 67.5
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.8e-20 101.7 66 71.2
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 2.8e-20 101.7 77 64.9
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.4e-19 99.4 74 64.9
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 9.1e-19 96.7 65 69.2
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 5.0e-17 90.9 89 56.2
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 6.5e-17 90.5 79 58.2
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 4.2e-16 87.8 56 73.2
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 9.4e-16 86.7 61 68.9
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 1.2e-15 86.3 84 56.0
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 2.7e-15 85.1 103 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.4e-14 82.8 80 53.8
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.0e-14 81.3 80 53.8
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 1.6e-10 69.3 44 75.0
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 1.0e-09 66.6 77 41.6
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 1.7e-09 65.9 58 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.2e-08 60.5 58 51.7
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 7.2e-08 60.5 40 72.5


User provided reference genes

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