Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 1.9e-178 629.0 314 100.0
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 1.7e-171 605.9 313 96.2
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.3e-158 563.1 312 89.4
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.7e-158 562.8 312 89.1
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 4.2e-157 558.1 312 88.5
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.3e-154 548.5 312 87.8
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.4e-154 547.4 312 87.5
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 2.4e-152 542.3 313 87.9
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.7e-150 536.2 313 87.2
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.9e-149 532.7 313 86.6
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 2.9e-142 508.8 314 81.5
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 5.3e-136 488.0 315 77.5
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 6.9e-136 487.6 329 75.1
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 3.4e-135 485.3 312 79.2
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.0e-134 483.8 315 76.8
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.1e-133 480.3 308 77.9
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 3.9e-131 471.9 308 75.6
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 6.7e-131 471.1 314 74.8
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 8.8e-131 470.7 319 73.4
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.5e-130 469.9 315 73.7
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 1.7e-129 466.5 315 73.0
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 8.2e-129 464.2 315 74.0
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.1e-128 463.8 315 74.3
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.8e-128 463.0 314 73.6
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 2.4e-128 462.6 315 74.0
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 2.4e-128 462.6 313 73.8
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 4.1e-128 461.8 315 72.1
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.0e-127 459.5 315 72.7
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 7.7e-127 457.6 315 72.7
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.2e-126 456.1 314 72.3
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 5.0e-126 454.9 308 73.1
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 6.5e-126 454.5 314 72.3
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.1e-125 453.8 308 72.4
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 1.1e-125 453.8 310 71.0
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.0e-124 447.6 317 71.0
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.4e-123 446.8 316 70.6
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.0e-123 445.3 307 73.0
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 5.2e-123 444.9 314 71.7
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 5.2e-123 444.9 314 71.7
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 8.8e-123 444.1 308 71.4
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 5.7e-122 441.4 314 70.1
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 9.7e-122 440.7 314 70.1
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 2.2e-121 439.5 314 72.0
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 6.3e-121 438.0 317 69.4
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.4e-120 436.8 315 71.4
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 4.1e-120 435.3 314 69.7
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.3e-120 434.9 318 68.9
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 9.1e-120 434.1 314 70.4
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 2.6e-119 432.6 314 69.1
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 1.0e-118 430.6 306 69.6
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 2.2e-118 429.5 319 67.7
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 3.8e-118 428.7 319 67.7
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 1.1e-117 427.2 324 66.0
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 5.5e-117 424.9 312 69.6
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 7.2e-117 424.5 314 68.2
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 7.2e-117 424.5 314 69.4
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 1.6e-116 423.3 317 67.5
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.1e-116 422.9 311 68.5
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 2.7e-116 422.5 318 67.0
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 4.7e-116 421.8 283 73.5
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 4.7e-116 421.8 317 66.9
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 4.7e-116 421.8 319 65.8
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.8e-115 419.9 314 68.2
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 5.2e-115 418.3 311 67.5
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 6.8e-115 417.9 290 71.7
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 6.8e-115 417.9 309 68.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.2e-114 417.2 316 64.2
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 1.5e-114 416.8 330 63.9
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 2.0e-114 416.4 308 67.9
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 2.6e-114 416.0 303 70.0
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.6e-114 416.0 317 67.2
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 3.4e-114 415.6 303 69.6
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.7e-113 413.3 281 72.2
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.2e-113 412.9 316 63.9
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.8e-113 411.8 315 63.8
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 8.3e-113 411.0 316 63.3
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 8.3e-113 411.0 387 57.9
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.8e-112 409.8 315 63.5
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 2.4e-112 409.5 341 63.0
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 3.1e-112 409.1 314 65.0
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 2.0e-111 406.4 303 68.3
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 1.3e-110 403.7 306 66.0
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 3.8e-110 402.1 311 63.7
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 8.5e-110 401.0 305 67.2
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 3.2e-109 399.1 290 68.3
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 3.2e-109 399.1 311 63.3
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.1e-108 396.4 312 64.7
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 6.1e-108 394.8 314 60.8
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 1.0e-107 394.0 305 65.6
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 1.4e-107 393.7 315 63.2
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 1.4e-107 393.7 271 71.6
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 2.3e-107 392.9 289 68.5
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 4.0e-107 392.1 306 65.0
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 1.2e-106 390.6 312 61.2
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 4.4e-106 388.7 307 63.2
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.3e-105 387.1 312 63.5
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 2.8e-105 386.0 330 60.6
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.8e-104 383.3 311 61.7
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.8e-104 383.3 291 64.6
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.8e-104 383.3 301 63.1
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 3.1e-104 382.5 304 62.8
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 1.6e-103 380.2 295 66.4
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.0e-103 379.8 303 65.0
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 4.5e-103 378.6 315 61.0
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 4.5e-103 378.6 318 62.9
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 5.9e-103 378.3 271 68.3
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 1.7e-102 376.7 315 61.6
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 7.2e-101 371.3 314 62.1
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 7.2e-101 371.3 308 60.4
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.8e-99 366.7 313 59.7
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.2e-98 364.0 305 62.0
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.2e-98 364.0 321 57.6
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.5e-98 363.6 280 64.6
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 1.8e-96 356.7 319 56.4
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.5e-95 352.4 279 65.6
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 3.5e-95 352.4 319 57.1
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 4.6e-95 352.1 313 59.4
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 8.6e-94 347.8 245 71.8
CSS0038772 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.1e-92 343.2 238 72.3
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 2.8e-92 342.8 303 57.1
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 3.6e-92 342.4 299 56.9
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-91 340.9 229 72.5
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-91 340.9 229 72.5
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 5.2e-91 338.6 309 55.0
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 2.6e-90 336.3 289 58.5
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 3.4e-90 335.9 288 59.4
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 4.4e-90 335.5 308 55.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 1.3e-89 334.0 303 56.1
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.2e-89 333.2 288 59.4
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 1.1e-88 330.9 295 56.9
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 7.0e-88 328.2 294 59.5
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 9.2e-88 327.8 303 54.8
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.6e-87 327.0 310 51.6
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 3.5e-87 325.9 315 53.7
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 3.5e-87 325.9 296 55.1
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 4.6e-87 325.5 296 55.1
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 4.6e-87 325.5 296 55.1
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 6.0e-87 325.1 289 59.2
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 1.3e-86 323.9 303 53.8
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 1.3e-86 323.9 335 52.5
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.7e-86 323.6 288 55.9
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 3.3e-85 319.3 296 54.4
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 3.3e-85 319.3 313 53.7
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 4.3e-85 318.9 296 54.4
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 9.5e-85 317.8 333 56.2
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 5.2e-83 312.0 315 51.4
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 1.2e-82 310.8 199 80.4
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 1.4e-80 303.9 312 53.5
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 1.5e-69 267.3 242 57.9
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 2.4e-67 260.0 286 51.0
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 3.4e-66 256.1 248 53.6
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.3e-65 254.2 281 47.3
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 3.3e-61 239.6 288 43.8
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 9.6e-61 238.0 309 40.5
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.1e-59 234.6 192 61.5
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 5.8e-58 228.8 196 60.7
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 8.4e-49 198.4 196 52.6
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 3.2e-48 196.4 227 46.3
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 6.7e-38 162.2 115 68.7
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.3e-36 155.6 119 63.9
SEGI_08198 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 2.5e-29 133.7 163 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4245 Anthoceros agrestis HOM05D003511 ORTHO05D004403 8.2e-28 128.6 134 47.0
Lj5A215G56 Lonicera japonica HOM05D003511 ORTHO05D004403 5.0e-17 92.8 72 59.7
Medtr1g107145 Medicago truncatula HOM05D003511 ORTHO05D004403 6.7e-14 82.4 49 71.4


User provided reference genes

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