Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 9.8e-40 166.4 87 100.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.1e-35 152.9 86 93.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.6e-34 149.1 86 90.7
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.6e-34 149.1 86 90.7
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.6e-34 147.9 86 90.7
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.8e-33 145.6 86 89.5
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.6e-26 122.5 89 77.5
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.4e-22 109.4 88 73.9
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 1.9e-22 109.0 88 72.7
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 1.0e-20 103.2 92 66.3
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 2.3e-20 102.1 90 68.9
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 5.1e-20 100.9 80 71.2
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 4.3e-19 97.8 90 66.7
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 4.3e-19 97.8 94 68.1
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.2e-18 96.3 85 63.5
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.2e-18 96.3 94 64.9
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.6e-18 95.9 86 65.1
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.8e-18 95.1 84 64.3
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.8e-18 95.1 97 62.9
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.8e-18 95.1 83 62.7
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 3.6e-18 94.7 84 65.5
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 3.6e-18 94.7 87 63.2
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 8.1e-18 93.6 81 64.2
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-17 93.2 83 63.9
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-17 93.2 83 63.9
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 1.1e-17 93.2 93 61.3
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.1e-17 93.2 83 61.4
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.4e-17 92.8 93 60.2
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.4e-17 92.8 86 62.8
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.4e-17 92.8 84 60.7
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.8e-17 92.4 92 60.9
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.8e-17 92.4 83 63.9
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 3.1e-17 91.7 91 63.7
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 3.1e-17 91.7 83 65.1
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.1e-17 91.7 89 65.2
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 4.0e-17 91.3 93 64.5
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.0e-17 91.3 93 58.1
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 5.2e-17 90.9 81 64.2
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 5.2e-17 90.9 92 59.8
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 5.2e-17 90.9 86 61.6
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 8.9e-17 90.1 87 62.1
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.5e-16 89.4 92 57.6
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.0e-16 89.0 93 62.4
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 2.6e-16 88.6 94 58.5
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 2.6e-16 88.6 95 58.9
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.4e-16 88.2 93 64.5
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.4e-16 88.2 83 62.7
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.4e-16 88.2 83 63.9
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.4e-16 88.2 87 63.2
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 4.4e-16 87.8 87 62.1
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 7.6e-16 87.0 91 62.6
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 7.6e-16 87.0 79 64.6
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 7.6e-16 87.0 92 60.9
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 9.9e-16 86.7 92 58.7
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 9.9e-16 86.7 91 60.4
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-15 86.3 89 60.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.3e-15 86.3 94 61.7
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-15 85.9 93 58.1
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.9e-15 85.1 83 59.0
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.8e-15 84.7 93 59.1
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.9e-15 84.3 85 60.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 6.4e-15 84.0 95 64.2
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.4e-14 82.8 92 55.4
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.4e-14 82.8 91 59.3
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.4e-14 82.8 90 58.9
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 1.9e-14 82.4 87 58.6
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 1.9e-14 82.4 93 58.1
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.9e-14 82.4 93 57.0
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.4e-14 82.0 91 58.2
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 3.2e-14 81.6 92 57.6
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 4.2e-14 81.3 93 58.1
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 5.4e-14 80.9 78 60.3
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 7.1e-14 80.5 86 59.3
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 9.2e-14 80.1 96 59.4
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 1.2e-13 79.7 73 61.6
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.6e-13 79.3 83 59.0
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 2.1e-13 79.0 93 61.3
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 2.7e-13 78.6 96 59.4
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.7e-13 78.6 90 57.8
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 6.0e-13 77.4 91 59.3
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 7.8e-13 77.0 94 58.5
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 7.8e-13 77.0 89 59.6
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.0e-12 76.6 87 57.5
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.0e-12 76.6 81 58.0
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 1.0e-12 76.6 93 61.3
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.3e-12 76.3 94 56.4
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.7e-12 75.9 97 56.7
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-12 75.9 91 53.8
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.7e-12 75.9 86 58.1
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 2.3e-12 75.5 89 56.2
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 5.1e-12 74.3 97 54.6
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 5.1e-12 74.3 93 61.3
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 6.6e-12 73.9 89 56.2
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 6.6e-12 73.9 94 52.1
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 8.7e-12 73.6 81 58.0
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.1e-11 73.2 95 55.8
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 1.1e-11 73.2 94 53.2
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.5e-11 72.8 85 55.3
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 1.5e-11 72.8 90 54.4
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.9e-11 72.4 95 58.9
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 1.9e-11 72.4 88 54.5
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.5e-11 72.0 89 53.9
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 3.3e-11 71.6 83 54.2
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 4.3e-11 71.2 90 57.8
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 4.3e-11 71.2 97 49.5
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 5.6e-11 70.9 91 57.1
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.6e-11 70.1 91 54.9
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.6e-11 70.1 91 54.9
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 1.6e-10 69.3 93 57.0
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 1.6e-10 69.3 93 57.0
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.1e-10 68.9 95 48.4
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.8e-10 68.6 93 57.0
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.8e-10 68.6 87 52.9
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 2.8e-10 68.6 95 50.5
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 6.2e-10 67.4 80 53.8
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-09 66.6 88 54.5
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-09 66.6 95 49.5
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 1.1e-09 66.6 84 52.4
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.8e-09 65.9 94 50.0
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-09 65.9 93 54.8
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.8e-09 65.9 93 54.8
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.8e-09 65.9 93 54.8
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.8e-09 65.9 91 51.6
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.8e-09 65.9 100 49.0
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 2.4e-09 65.5 95 49.5
DCAR_021977 Daucus carota HOM05D003477 ORTHO05D004043 3.1e-09 65.1 91 52.7
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 3.1e-09 65.1 95 54.7
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 4.0e-09 64.7 90 52.2
unitig_22.g5195 Utricularia gibba HOM05D003477 ORTHO05D004043 4.0e-09 64.7 87 50.6
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 5.3e-09 64.3 91 52.7
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 6.9e-09 63.9 88 50.0
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.9e-09 63.9 91 50.5
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.0e-09 63.5 91 49.5
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-08 63.2 95 47.4
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.0e-08 62.4 87 51.7
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.0e-08 62.4 84 50.0
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 3.4e-08 61.6 84 51.2
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 3.4e-08 61.6 97 51.5
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 3.4e-08 61.6 41 73.2
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 4.4e-08 61.2 90 48.9
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 4.4e-08 61.2 51 58.8
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 5.8e-08 60.8 71 56.3
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 9.9e-08 60.1 93 48.4
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 9.9e-08 60.1 96 47.9
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.3e-07 59.7 99 55.6
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.3e-07 59.7 92 51.1
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.7e-07 59.3 100 51.0
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.7e-07 59.3 88 48.9
SGA_v2.0_scaffold13G06619 Striga asiatica HOM05D003477 ORTHO05D004043 1.7e-07 59.3 109 43.1
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.2e-07 58.9 93 51.6
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.2e-07 58.9 93 51.6
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.2e-07 58.9 46 67.4
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 2.9e-07 58.5 98 46.9
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 2.9e-07 58.5 90 47.8
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 2.9e-07 58.5 98 46.9
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.9e-07 58.5 84 51.2
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 2.9e-07 58.5 93 47.3
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 2.9e-07 58.5 93 47.3
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.9e-07 58.5 92 51.1
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 3.8e-07 58.2 93 50.5
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 3.8e-07 58.2 97 49.5
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.4e-07 57.4 75 53.3
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 6.4e-07 57.4 95 46.3
SalBow6G1437 Salvia bowleyana HOM05D003477 ORTHO05D004043 8.4e-07 57.0 61 60.7
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-06 56.2 77 51.9
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.4e-06 56.2 99 48.5
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.9e-06 55.8 94 47.9
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 4.2e-06 54.7 86 43.0
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 5.4e-06 54.3 93 46.2
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.4e-06 54.3 82 41.5
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 7.1e-06 53.9 86 43.0
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 7.1e-06 53.9 86 43.0
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 9.3e-06 53.5 96 50.0
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 9.3e-06 53.5 81 46.9


User provided reference genes

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