Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.4e-169 597.8 291 100.0
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.2e-162 574.3 291 95.9
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.2e-159 565.1 285 95.8
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-158 562.8 285 95.8
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 9.0e-146 520.4 291 86.3
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 9.9e-145 516.9 291 86.3
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 4.6e-134 481.5 291 80.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 6.7e-133 477.6 291 79.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.7e-133 477.6 291 83.5
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.3e-132 474.9 289 77.5
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.6e-132 474.6 291 79.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.6e-132 473.8 286 78.7
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.4e-130 469.9 291 77.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.0e-130 468.4 291 76.6
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.2e-129 466.8 291 76.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-129 466.5 291 76.6
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 3.4e-129 465.3 289 76.8
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 5.8e-129 464.5 291 75.9
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.6e-129 464.2 291 76.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.9e-128 462.2 291 75.6
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.8e-128 461.8 292 75.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.8e-128 461.8 292 75.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.1e-127 460.3 290 76.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.4e-127 459.9 291 74.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.9e-127 459.5 291 75.6
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.5e-127 459.1 292 76.4
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 2.1e-126 456.1 289 75.8
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.1e-126 456.1 291 75.3
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.7e-126 455.7 285 80.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.7e-126 455.7 291 75.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 6.0e-126 454.5 287 76.3
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.8e-125 453.0 301 73.4
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.0e-125 452.2 292 75.7
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 3.9e-125 451.8 291 74.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 8.7e-125 450.7 290 74.1
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 2.5e-124 449.1 289 74.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.3e-124 448.7 289 74.4
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 3.3e-124 448.7 289 74.7
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.3e-124 448.4 291 75.9
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.6e-124 448.0 286 74.5
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 5.6e-124 448.0 289 74.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.4e-124 447.6 289 74.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.3e-123 446.8 328 67.7
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.6e-123 446.4 289 74.0
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.6e-123 446.4 291 74.9
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.7e-123 445.3 284 74.3
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.8e-123 444.9 286 72.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.1e-122 443.7 284 76.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.4e-122 443.4 292 72.6
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.8e-122 443.0 291 73.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.3e-122 441.4 297 70.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.0e-121 439.5 286 73.1
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.0e-121 439.5 290 75.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-121 439.1 291 72.2
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-121 439.1 291 72.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.4e-121 438.7 286 72.7
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.5e-121 438.3 288 73.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 5.8e-121 438.0 291 73.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 7.6e-121 437.6 289 72.0
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.2e-120 436.0 291 74.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.9e-120 435.6 254 80.7
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 286 71.7
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.9e-119 433.0 286 72.7
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 3.2e-119 432.2 284 72.9
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 3.2e-119 432.2 286 71.3
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.2e-119 432.2 287 71.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.2e-119 431.8 291 72.5
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 7.1e-119 431.0 290 72.1
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 9.3e-119 430.6 284 71.8
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 9.3e-119 430.6 284 71.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.6e-118 429.9 286 71.7
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.5e-118 428.7 291 71.8
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 4.6e-118 428.3 254 81.1
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.0e-118 427.9 325 64.6
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.0e-117 427.2 288 71.2
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.3e-117 426.8 291 71.8
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.3e-117 426.0 286 71.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.3e-117 426.0 301 69.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 72.1
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.1e-117 424.9 291 69.4
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 2.2e-115 419.5 286 70.6
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 8.2e-115 417.5 291 69.8
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.4e-114 416.0 286 69.6
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.1e-114 415.6 291 69.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 5.3e-114 414.8 286 69.9
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 9.0e-114 414.1 286 70.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.2e-113 413.7 287 69.0
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 69.2
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 5.9e-113 411.4 286 68.9
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 68.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.0e-112 410.6 291 68.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.3e-112 410.2 241 80.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.5e-112 407.5 326 62.6
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.5e-112 407.5 326 62.6
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.4e-111 406.8 294 68.7
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.2e-110 403.7 287 70.7
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 2.1e-110 402.9 291 69.1
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 7.9e-110 401.0 302 65.6
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.0e-109 400.6 255 75.3
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.3e-109 399.4 289 67.5
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.7e-108 394.8 291 66.0
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.1e-106 390.6 255 72.9
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.0e-105 386.3 286 66.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.6e-105 386.0 255 74.1
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.9e-105 384.8 254 72.4
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.7e-102 375.2 279 64.9
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.3e-101 372.9 232 76.7
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 4.4e-100 368.6 280 62.9
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 5.3e-98 361.7 290 63.1
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.2e-96 356.3 290 62.4
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 7.2e-95 351.3 282 61.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.3e-91 340.5 208 76.9
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.0e-89 333.2 258 63.6
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.7e-88 330.1 241 66.0
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.2e-84 317.4 284 57.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 9.7e-84 314.3 284 56.0
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.8e-83 312.8 285 53.0
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 7.0e-82 308.1 292 55.5
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.6e-78 295.8 238 60.9
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.6e-76 289.7 228 65.8
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.5e-68 263.8 169 73.4
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 4.7e-62 242.3 193 62.2
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-58 229.9 298 46.0
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 4.3e-55 219.2 130 77.7
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.3e-48 197.6 263 42.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.4e-42 175.6 152 61.2
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 9.2e-42 174.9 273 37.4
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 8.1e-38 161.8 150 57.3
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.9e-35 153.3 150 55.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.9e-35 153.3 150 55.3
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 7.8e-33 145.2 138 58.0
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 4.8e-30 136.0 109 58.7
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.1e-29 134.8 368 28.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-28 131.3 264 31.8
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.3e-27 127.9 169 43.2
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.8e-27 126.3 66 92.4
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 8.4e-27 125.2 93 66.7
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 8.7e-24 115.2 89 66.3
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.3e-23 112.8 100 53.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 3.6e-22 109.8 82 63.4
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.6e-20 103.6 81 61.7
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.1e-17 94.0 60 73.3
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-17 94.0 144 42.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.7e-16 88.6 108 47.2
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 9.6e-15 85.1 92 47.8
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.7e-14 83.2 80 52.5
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.2e-14 82.4 56 69.6
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.2e-14 82.4 80 52.5
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.2e-14 82.4 80 52.5
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.2e-14 82.4 46 76.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.1e-13 81.6 92 47.8
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.1e-13 81.6 88 50.0
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.1e-13 81.6 88 50.0
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.4e-13 80.5 68 57.4
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 2.4e-13 80.5 124 45.2
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.0e-13 79.7 64 59.4
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.0e-13 79.7 187 31.0
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.6e-12 75.5 214 32.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.5e-10 70.5 52 71.2
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.5e-07 61.2 45 71.1
RcHm_v2.0_Chr6g0257511 Rosa chinensis HOM05D004481 ORTHO05D005350 3.3e-07 60.1 53 60.4
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 1.6e-06 57.8 40 70.0
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.2e-06 55.5 48 54.2
VMungo1309G0877 Vigna mungo HOM05D000050 ORTHO05D000380 8.2e-06 55.5 44 61.4


User provided reference genes

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