Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 8.0e-288 993.0 493 100.0
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 9.5e-265 916.4 483 94.4
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-252 876.3 483 90.3
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.7e-251 871.7 483 90.1
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.9e-249 865.5 483 89.2
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 4.3e-249 864.4 483 89.0
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 2.3e-234 815.5 482 83.4
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 3.5e-227 791.6 477 82.0
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-207 726.9 436 83.5
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.4e-207 726.5 476 76.1
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.1e-207 724.9 482 73.7
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.4e-206 721.8 482 75.1
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 5.9e-206 721.1 488 73.8
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-205 719.9 476 75.4
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.2e-204 715.3 479 72.2
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 9.3e-204 713.8 483 73.5
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 1.2e-203 713.4 476 73.9
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.6e-203 713.0 482 73.4
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 1.0e-202 710.3 392 91.8
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.3e-200 703.4 482 72.0
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.4e-199 699.9 482 71.6
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.5e-196 689.1 477 72.5
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 4.2e-196 688.3 477 72.3
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 7.2e-196 687.6 483 71.2
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.6e-195 686.4 478 72.0
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 3.0e-194 682.2 478 72.2
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 5.1e-194 681.4 472 72.7
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.1e-193 680.2 485 69.9
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 3.3e-193 678.7 479 71.8
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.3e-193 678.7 476 70.8
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 7.4e-193 677.6 479 71.8
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 9.7e-193 677.2 455 73.6
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.3e-192 676.8 483 71.0
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.3e-192 676.8 477 71.3
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.2e-192 676.0 476 71.0
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.8e-192 675.6 485 70.1
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 4.8e-192 674.9 476 70.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 8.2e-192 674.1 485 69.9
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 9.1e-191 670.6 480 71.0
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 9.1e-191 670.6 455 73.2
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.2e-190 670.2 476 70.0
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.2e-190 670.2 483 69.8
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.0e-190 669.5 455 72.3
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.0e-190 669.5 455 72.7
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 2.6e-190 669.1 510 67.5
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 5.9e-190 667.9 479 69.5
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.0e-189 667.2 476 70.2
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.3e-189 666.8 455 72.7
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.3e-189 666.8 455 72.7
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 6.5e-189 664.5 494 68.0
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 8.5e-189 664.1 480 69.6
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.1e-188 663.7 432 75.5
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.5e-188 662.5 479 69.7
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.6e-187 659.8 485 68.5
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.1e-187 659.4 484 69.2
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 6.1e-187 657.9 485 68.2
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.0e-186 657.1 457 71.8
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 1.8e-186 656.4 486 67.3
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.0e-185 652.9 455 71.0
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 2.6e-185 652.5 454 69.6
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 3.7e-184 648.7 456 70.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 7.7e-182 641.0 485 67.4
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.2e-180 635.2 485 66.0
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 7.5e-177 624.4 455 67.5
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 4.8e-176 621.7 459 68.2
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.1e-175 620.5 462 68.2
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 3.1e-175 619.0 522 62.1
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 4.1e-175 618.6 457 67.6
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 5.3e-175 618.2 455 67.0
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 5.3e-175 618.2 471 67.1
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 5.3e-175 618.2 488 63.1
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.2e-174 617.1 453 68.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 4.5e-174 615.1 460 67.4
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.5e-174 615.1 465 65.8
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 5.9e-174 614.8 456 65.8
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 2.2e-173 612.8 477 64.4
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.9e-173 612.5 456 65.8
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.9e-173 612.5 465 65.6
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.9e-173 612.5 408 73.8
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 3.8e-173 612.1 461 66.8
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 3.8e-173 612.1 465 65.6
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.1e-172 610.5 469 65.9
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.5e-172 610.1 461 66.2
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.9e-172 609.8 455 67.0
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 2.5e-172 609.4 461 66.4
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 9.4e-172 607.4 455 65.3
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.0e-170 604.0 459 68.2
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 1.8e-170 603.2 452 66.2
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 3.0e-170 602.4 455 66.4
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.5e-169 600.1 458 65.5
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 2.6e-169 599.4 477 63.5
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 5.7e-169 598.2 461 65.1
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 7.5e-169 597.8 455 65.9
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 3.7e-168 595.5 461 64.6
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 3.7e-168 595.5 461 64.6
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 4.8e-168 595.1 474 63.7
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 7.0e-167 591.3 455 64.8
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 3.5e-166 589.0 481 62.0
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 4.5e-166 588.6 446 67.3
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 5.9e-166 588.2 459 64.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.5e-164 583.6 469 64.2
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.5e-164 583.6 479 62.2
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 1.9e-164 583.2 458 63.3
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.6e-163 580.1 479 61.8
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 8.0e-163 577.8 457 63.7
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.0e-162 577.4 469 64.2
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 2.3e-162 576.2 456 61.8
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 3.0e-162 575.9 458 64.2
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.2e-161 573.9 501 59.5
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.0e-161 573.2 477 60.2
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 7.5e-161 571.2 477 61.6
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.7e-160 570.1 428 65.2
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.7e-160 570.1 456 62.7
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 2.8e-160 569.3 467 63.0
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.4e-159 566.2 455 62.9
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.4e-159 566.2 455 61.5
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 7.0e-159 564.7 458 61.8
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 9.2e-159 564.3 457 61.5
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.7e-158 562.8 455 62.2
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.7e-158 562.8 455 62.2
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 4.5e-158 562.0 428 65.0
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 3.8e-157 558.9 466 60.5
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.2e-155 553.9 479 59.5
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 4.7e-155 552.0 414 65.7
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 4.7e-155 552.0 468 61.8
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.2e-153 547.4 457 60.6
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 3.7e-152 542.3 471 59.2
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 3.7e-152 542.3 471 59.0
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.9e-151 540.0 459 57.3
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.2e-151 539.3 486 57.8
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 5.4e-151 538.5 492 56.5
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 1.2e-150 537.3 459 60.1
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.2e-150 537.3 458 59.2
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.7e-149 533.5 456 59.4
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 8.9e-146 521.2 371 67.9
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.2e-142 510.8 456 58.6
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 7.8e-142 508.1 408 63.7
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 4.3e-140 502.3 456 56.8
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.3e-140 501.5 455 56.7
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.6e-139 500.4 494 51.0
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 1.4e-138 497.3 344 70.3
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.5e-137 493.8 376 67.0
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 7.5e-137 491.5 328 74.7
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.2e-135 486.1 482 51.5
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 1.6e-134 483.8 418 60.3
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 4.6e-134 482.3 412 56.6
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 3.0e-133 479.6 440 58.2
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 9.9e-129 464.5 401 60.6
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.1e-127 461.1 455 54.5
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 5.4e-127 458.8 445 52.4
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 2.4e-122 443.4 457 52.5
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 9.0e-122 441.4 309 70.2
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 1.1e-119 434.5 446 49.6
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 5.6e-116 422.2 505 46.7
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 5.8e-113 412.1 385 55.8
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.0e-93 348.2 269 65.1
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 1.1e-87 328.2 428 44.9
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 5.0e-80 302.8 451 40.4
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 8.2e-75 285.4 232 62.1
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 1.2e-54 218.4 130 80.8
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.7e-51 208.0 171 59.6
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 1.8e-50 204.5 116 79.3
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.8e-43 180.6 158 58.2
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 2.0e-36 157.9 85 90.6
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 6.2e-30 136.3 114 61.4
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 1.3e-24 118.6 299 28.4
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 1.1e-23 115.5 84 70.2
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 3.6e-14 84.0 45 86.7
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 8.4e-11 72.8 151 33.8
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 1.4e-10 72.0 45 77.8
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 4.6e-09 67.0 75 53.3
vmacro19459 Vaccinium macrocarpon HOM05D003561 ORTHO05D033939 8.7e-08 62.8 48 64.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 5.6e-07 60.1 246 25.2
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 7.3e-07 59.7 216 25.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 7.3e-07 59.7 216 25.0
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.6e-06 58.5 216 25.0
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.6e-06 58.5 216 25.0
Lj9A35G21 Lonicera japonica HOM05D003561 ORTHO05D234523 2.8e-06 57.8 36 75.0
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 6.2e-06 56.6 35 68.6


User provided reference genes

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