Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 2.8e-97 358.6 182 100.0
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-64 250.0 140 92.1
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 8.6e-62 240.7 140 87.9
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.5e-61 240.0 140 87.9
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.3e-61 237.7 140 87.1
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.3e-61 237.7 140 87.9
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 2.3e-59 232.6 140 84.3
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.3e-57 224.2 133 82.0
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 9.2e-56 220.7 117 96.6
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.9e-54 215.3 140 77.9
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 6.6e-54 214.5 140 77.9
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.3e-53 212.2 133 80.5
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 9.5e-53 210.7 140 75.0
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 1.2e-52 210.3 133 78.2
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.0e-52 207.6 135 75.6
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 8.0e-52 207.6 135 75.6
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 8.0e-52 207.6 140 74.3
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 1.4e-51 206.8 140 74.3
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 5.2e-51 204.9 140 72.1
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 5.2e-51 204.9 140 72.1
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 6.8e-51 204.5 135 74.8
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 8.9e-51 204.1 140 72.1
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 8.9e-51 204.1 140 72.9
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.5e-50 203.4 140 73.6
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 1.5e-50 203.4 132 75.0
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 1.5e-50 203.4 132 75.8
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 4.4e-50 201.8 152 66.4
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 4.4e-50 201.8 152 66.4
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 1.7e-49 199.9 140 70.0
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.1e-48 197.2 132 75.8
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.4e-48 196.8 140 69.3
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.4e-48 196.8 140 69.3
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 2.4e-48 196.1 138 71.0
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 3.2e-48 195.7 140 70.0
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 3.2e-48 195.7 140 71.4
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 4.1e-48 195.3 140 68.6
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.1e-48 195.3 130 74.6
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 4.1e-48 195.3 140 70.7
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 5.4e-48 194.9 133 71.4
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 7.0e-48 194.5 138 68.8
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 2.0e-47 193.0 130 72.3
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 7.8e-47 191.0 130 73.1
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 1.0e-46 190.7 138 68.1
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.7e-46 189.9 140 67.9
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.3e-46 189.5 132 72.7
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.3e-46 189.5 139 71.2
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 3.0e-46 189.1 140 67.1
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.9e-46 188.7 140 67.1
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 6.6e-46 188.0 111 83.8
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 6.6e-46 188.0 139 66.9
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 6.6e-46 188.0 139 66.9
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 8.6e-46 187.6 140 67.1
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.5e-45 186.8 138 68.1
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 4.3e-45 185.3 139 66.2
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.3e-45 184.5 140 65.7
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 9.5e-45 184.1 140 66.4
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.2e-44 183.7 133 68.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.6e-44 183.3 132 66.7
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.6e-44 183.3 140 64.3
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.1e-44 183.0 131 71.0
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 2.8e-44 182.6 139 65.5
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.7e-44 181.8 140 65.0
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 2.3e-43 179.5 138 66.7
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 1.5e-42 176.8 140 62.9
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 3.4e-42 175.6 138 65.2
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.3e-41 173.7 140 60.0
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.4e-40 170.2 140 60.0
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.4e-40 170.2 133 61.7
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.9e-40 169.9 138 63.8
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.7e-39 166.0 140 60.7
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 3.5e-39 165.6 133 61.7
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 7.8e-39 164.5 139 59.7
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 1.0e-38 164.1 140 56.4
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.7e-38 163.3 140 58.6
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 2.3e-38 162.9 164 52.4
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.0e-38 162.5 140 59.3
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 5.1e-38 161.8 140 60.0
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 8.6e-38 161.0 141 58.2
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.1e-37 160.6 133 58.6
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.9e-37 159.8 132 60.6
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.9e-37 159.8 133 61.7
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.5e-37 159.5 139 58.3
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 7.3e-37 157.9 137 59.9
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 7.3e-37 157.9 184 47.8
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 9.5e-37 157.5 141 56.7
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 1.2e-36 157.1 138 58.0
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 1.6e-36 156.8 135 59.3
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.6e-36 156.8 135 59.3
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.6e-36 156.8 140 55.0
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.8e-36 156.0 130 60.8
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.1e-35 154.1 141 54.6
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.4e-35 153.7 141 54.6
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.3e-35 152.9 140 59.3
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.0e-35 152.1 141 53.9
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 4.0e-35 152.1 140 59.3
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 8.9e-35 151.0 142 54.9
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.2e-34 150.6 134 57.5
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.5e-34 150.2 137 57.7
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 3.4e-34 149.1 140 57.9
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.4e-34 148.7 149 61.7
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.9e-34 147.5 140 57.1
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.9e-34 147.5 140 57.1
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 9.9e-34 147.5 141 54.6
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 2.2e-33 146.4 137 54.0
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 4.9e-33 145.2 133 55.6
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.9e-33 145.2 138 56.5
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 6.4e-33 144.8 140 57.1
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 8.4e-33 144.4 125 59.2
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.1e-32 144.1 138 56.5
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.4e-32 143.7 138 55.8
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.9e-32 143.3 137 56.2
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 5.4e-32 141.7 132 56.1
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.2e-31 140.6 140 50.7
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.1e-31 139.8 130 58.5
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 3.5e-31 139.0 138 55.1
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 6.0e-31 138.3 125 57.6
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 7.8e-31 137.9 125 56.8
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.7e-30 136.7 138 54.3
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.7e-30 136.7 132 55.3
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 2.3e-30 136.3 136 56.6
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 2.3e-30 136.3 136 56.6
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 5.1e-30 135.2 132 53.0
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 5.1e-30 135.2 137 52.6
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 1.1e-29 134.0 141 52.5
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.5e-29 133.7 141 53.2
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 1.9e-29 133.3 132 53.0
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 2.5e-29 132.9 132 53.8
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 2.5e-29 132.9 132 53.8
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 2.5e-29 132.9 132 53.8
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 3.3e-29 132.5 135 48.9
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 3.3e-29 132.5 141 52.5
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 4.3e-29 132.1 132 52.3
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 7.3e-29 131.3 141 50.4
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 9.6e-29 131.0 132 52.3
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 1.2e-28 130.6 132 53.0
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.6e-28 130.2 133 50.4
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.6e-28 129.0 141 49.6
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 4.7e-28 128.6 141 49.6
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 6.2e-28 128.3 132 52.3
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 8.1e-28 127.9 132 52.3
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.1e-27 127.5 133 49.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 7.6e-26 121.3 126 50.8
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 9.9e-26 120.9 142 48.6
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 9.9e-26 120.9 136 49.3
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 3.8e-25 119.0 140 50.7
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 7.1e-24 114.8 102 59.8
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.6e-23 113.6 141 48.2
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 6.6e-22 108.2 87 60.9
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.3e-20 104.0 132 43.9
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 6.2e-20 101.7 72 69.4
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 6.2e-20 101.7 131 41.2
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 1.4e-19 100.5 81 59.3
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 9.0e-19 97.8 130 43.8
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 3.4e-18 95.9 132 43.2
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.5e-13 80.5 53 73.6
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 4.8e-12 75.5 83 48.2
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 1.7e-09 67.0 77 48.1
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 5.1e-06 55.5 42 61.9


User provided reference genes

Program Settings