Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 7.2e-49 196.8 93 100.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 4.6e-35 151.0 83 86.7
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.2e-32 142.9 84 78.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.6e-32 141.4 84 77.4
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 8.1e-32 140.2 82 84.1
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-32 140.2 82 84.1
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-32 140.2 82 84.1
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-32 140.2 82 84.1
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-32 140.2 82 84.1
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.8e-31 139.0 83 78.3
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-31 138.7 82 82.9
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 6.8e-31 137.1 82 76.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.0e-30 135.6 82 76.8
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.0e-30 135.6 82 76.8
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.6e-30 135.2 82 75.6
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 4.9e-29 131.0 82 73.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 8.3e-29 130.2 82 73.2
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.1e-28 129.8 82 73.2
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.9e-28 129.0 82 73.2
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.9e-28 129.0 82 73.2
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.9e-28 129.0 84 69.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.4e-28 128.6 82 69.5
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.4e-28 128.6 82 72.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.4e-28 128.6 82 74.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.2e-28 128.3 82 73.2
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 4.1e-28 127.9 82 72.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.4e-28 127.5 82 70.7
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.4e-28 127.5 82 69.5
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 7.1e-28 127.1 82 72.0
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 7.1e-28 127.1 82 72.0
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 7.1e-28 127.1 82 72.0
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.2e-27 126.3 82 72.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.2e-27 126.3 82 72.0
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.2e-27 126.3 82 70.7
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.6e-27 125.9 82 69.5
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.6e-27 125.9 82 70.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-27 125.9 62 95.2
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.1e-27 125.6 82 70.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-27 125.6 82 68.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.1e-27 125.6 82 69.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 2.1e-27 125.6 82 70.7
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 2.7e-27 125.2 82 70.7
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.7e-27 125.2 82 69.5
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 2.7e-27 125.2 84 65.5
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.7e-27 125.2 79 73.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 4.6e-27 124.4 82 72.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.6e-27 124.4 87 62.1
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 4.6e-27 124.4 82 67.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.0e-27 124.0 82 68.3
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 6.0e-27 124.0 82 68.3
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 7.8e-27 123.6 82 68.3
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 7.8e-27 123.6 80 71.2
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 7.8e-27 123.6 82 68.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 7.8e-27 123.6 82 69.5
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 7.8e-27 123.6 82 69.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.0e-26 123.2 82 68.3
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-26 123.2 82 69.5
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-26 122.9 82 67.1
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.3e-26 122.9 82 67.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.3e-26 122.9 82 69.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.3e-26 122.9 83 65.1
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.7e-26 122.5 82 67.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.7e-26 122.5 82 70.7
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.7e-26 122.5 82 68.3
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.7e-26 122.5 82 68.3
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 2.3e-26 122.1 82 70.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.3e-26 122.1 82 65.9
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.3e-26 122.1 82 67.1
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.3e-26 122.1 82 69.5
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 3.0e-26 121.7 82 65.9
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 3.0e-26 121.7 82 65.9
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.0e-26 121.7 82 65.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 3.0e-26 121.7 82 67.1
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.9e-26 121.3 78 70.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.9e-26 121.3 79 68.4
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 3.9e-26 121.3 82 68.3
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 5.1e-26 120.9 82 64.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 5.1e-26 120.9 82 67.1
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 64.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.6e-26 120.6 80 67.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 64.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 64.6
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 64.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 64.6
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 65.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 65.9
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 68.3
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 68.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 6.6e-26 120.6 82 65.9
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 8.6e-26 120.2 82 68.3
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 8.6e-26 120.2 82 67.1
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 8.6e-26 120.2 82 65.9
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-25 119.8 79 67.1
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.5e-25 119.4 82 65.9
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.5e-25 119.4 82 67.1
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.5e-25 119.4 87 66.7
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-25 119.0 82 63.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.9e-25 119.0 82 64.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.9e-25 119.0 82 67.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.9e-25 119.0 84 61.9
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-25 118.6 81 66.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.5e-25 118.6 82 67.1
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.3e-25 118.2 80 66.2
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 3.3e-25 118.2 82 68.3
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.3e-25 117.9 82 63.4
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.3e-25 117.9 82 65.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 7.3e-25 117.1 82 64.6
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 7.3e-25 117.1 82 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 9.5e-25 116.7 82 62.2
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 9.5e-25 116.7 82 63.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 9.5e-25 116.7 82 63.4
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 9.5e-25 116.7 81 66.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.2e-24 116.3 84 60.7
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-24 115.9 78 66.7
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.1e-24 115.5 82 62.2
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.6e-24 114.8 92 62.0
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.6e-24 114.8 82 62.2
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 4.7e-24 114.4 104 55.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.3e-23 112.1 79 62.0
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.1e-23 111.7 79 63.3
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 5.2e-23 110.9 79 67.1
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 8.9e-23 110.2 82 61.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.5e-22 109.4 98 58.2
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.6e-22 108.6 82 63.4
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 3.4e-22 108.2 111 50.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 7.6e-22 107.1 97 53.6
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.2e-21 105.5 82 59.8
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.2e-20 101.7 81 55.6
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 2.1e-19 99.0 80 57.5
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.0e-19 97.4 82 61.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 6.0e-19 97.4 62 75.8
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 7.8e-19 97.1 80 56.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.9e-18 94.7 62 72.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 6.6e-18 94.0 80 52.5
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-17 92.8 63 61.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.1e-16 89.0 54 75.9
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.6e-16 88.2 62 67.7
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.7e-16 87.8 67 62.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 4.0e-15 84.7 62 64.5
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-14 83.2 60 61.7
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-11 73.2 47 66.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.5e-11 71.6 49 69.4
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 6.6e-10 67.4 81 42.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-09 65.5 45 57.8
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.5e-09 65.5 50 58.0
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 4.0e-07 58.2 74 40.5
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 2.6e-06 55.5 28 89.3


User provided reference genes

Program Settings