Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.6e-55 219.2 111 100.0
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 9.6e-48 193.4 109 93.6
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 9.3e-43 176.8 111 88.3
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 3.3e-40 168.3 111 84.7
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 3.3e-40 168.3 111 84.7
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 5.3e-38 161.0 111 82.9
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 2.1e-26 122.5 110 64.5
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 4.0e-22 108.2 109 59.6
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 5.7e-16 87.8 84 59.5
RcHm_v2.0_Chr6g0253731 Rosa chinensis HOM05D007107 ORTHO05D025431 2.8e-15 85.5 102 52.0
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 2.8e-15 85.5 107 50.5
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 3.7e-15 85.1 85 57.6
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.4e-14 83.2 81 59.3
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.8e-14 82.8 111 52.3
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.8e-14 82.8 85 57.6
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.4e-14 82.4 110 48.2
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 3.1e-14 82.0 96 52.1
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 4.1e-14 81.6 98 52.0
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 5.3e-14 81.3 104 54.8
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.9e-14 80.9 107 48.6
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 2.0e-13 79.3 112 49.1
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.6e-13 79.0 75 58.7
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.6e-13 79.0 75 58.7
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 3.4e-13 78.6 93 53.8
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 3.4e-13 78.6 94 53.2
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.4e-13 78.6 99 51.5
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.4e-13 78.6 81 56.8
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 5.9e-13 77.8 106 48.1
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 5.9e-13 77.8 106 46.2
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 7.6e-13 77.4 74 60.8
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 7.6e-13 77.4 76 63.2
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.3e-12 76.6 75 57.3
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.7e-12 76.3 106 47.2
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.7e-12 76.3 111 47.7
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 3.8e-12 75.1 107 46.7
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 5.0e-12 74.7 104 47.1
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 5.0e-12 74.7 104 47.1
FAN24G1269 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.5e-12 74.3 49 85.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 8.5e-12 73.9 106 47.2
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.1e-11 73.6 71 60.6
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.1e-11 73.6 65 66.2
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.4e-11 73.2 105 44.8
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.4e-11 73.2 71 60.6
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 1.9e-11 72.8 64 62.5
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 2.5e-11 72.4 105 43.8
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 3.2e-11 72.0 93 49.5
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.2e-11 71.6 100 53.0
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.2e-11 71.6 73 63.0
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 5.5e-11 71.2 65 64.6
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 5.5e-11 71.2 87 52.9
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 7.2e-11 70.9 94 50.0
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 7.2e-11 70.9 64 64.1
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 9.4e-11 70.5 72 61.1
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 1.6e-10 69.7 80 52.5
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.6e-10 69.7 71 56.3
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.1e-10 69.3 88 53.4
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 2.7e-10 68.9 74 58.1
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 3.6e-10 68.6 101 43.6
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 4.6e-10 68.2 85 50.6
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 4.6e-10 68.2 64 60.9
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 6.1e-10 67.8 86 50.0
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 7.9e-10 67.4 103 40.8
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 1.0e-09 67.0 87 49.4
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.4e-09 66.6 112 42.0
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 1.8e-09 66.2 94 51.1
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 2.3e-09 65.9 64 56.2
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 3.0e-09 65.5 84 52.4
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 3.0e-09 65.5 85 48.2
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 3.0e-09 65.5 73 56.2
FvH4_2g04291 Fragaria vesca HOM05D007107 ORTHO05D025431 6.7e-09 64.3 103 44.7
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.9e-08 62.8 73 50.7
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.9e-08 62.8 87 49.4
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.5e-08 62.4 75 50.7
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 2.5e-08 62.4 75 50.7
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.3e-08 62.0 95 43.2
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 4.3e-08 61.6 73 50.7
Prupe.8G144100 Prunus persica HOM05D007107 ORTHO05D009198 4.3e-08 61.6 90 48.9
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 5.7e-08 61.2 83 51.8
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 7.4e-08 60.8 102 41.2
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 7.4e-08 60.8 102 41.2
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 7.4e-08 60.8 102 41.2
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 9.7e-08 60.5 73 49.3
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 9.7e-08 60.5 73 49.3
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 9.7e-08 60.5 75 46.7
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 9.7e-08 60.5 101 41.6
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 1.3e-07 60.1 73 49.3
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.3e-07 60.1 97 45.4
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.3e-07 60.1 68 51.5
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 1.7e-07 59.7 73 49.3
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.7e-07 59.7 85 49.4
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.7e-07 59.7 76 48.7
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 1.7e-07 59.7 91 42.9
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 2.2e-07 59.3 70 50.0
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 2.2e-07 59.3 70 50.0
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 2.2e-07 59.3 70 44.3
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.1e-06 57.0 99 44.4
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 1.4e-06 56.6 106 37.7
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 3.1e-06 55.5 95 45.3
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 5.3e-06 54.7 71 50.7


User provided reference genes

Program Settings