Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 9.1e-81 304.3 263 100.0
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-62 243.8 210 94.8
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.1e-52 209.5 213 82.6
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 6.8e-52 208.4 216 83.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.8e-52 208.4 213 83.1
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.6e-51 206.5 210 87.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.4e-51 206.1 217 82.9
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 5.0e-47 192.2 210 79.5
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.1e-44 183.0 256 67.6
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.7e-42 177.2 258 64.7
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 3.6e-29 132.9 211 64.0
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 9.9e-27 124.8 222 58.6
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.2e-26 123.6 253 54.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 5.4e-25 119.0 143 52.4
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 7.1e-25 118.6 143 53.8
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.2e-24 117.9 262 53.4
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.7e-24 116.7 208 51.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 3.5e-24 116.3 145 54.5
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.0e-23 114.8 208 51.4
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.0e-23 114.8 222 61.7
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.7e-23 114.0 143 53.1
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.9e-23 112.8 224 49.1
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 6.6e-23 112.1 143 51.7
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.5e-22 110.9 145 53.1
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.9e-22 110.5 138 50.7
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.9e-22 110.5 138 50.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.9e-22 110.5 212 59.9
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.5e-22 110.2 138 50.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.3e-22 109.8 216 57.4
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.6e-22 109.0 203 65.5
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.6e-21 107.5 203 65.0
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.8e-21 106.7 143 51.7
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 2.8e-21 106.7 121 55.4
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 6.2e-21 105.5 137 50.4
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.4e-20 104.4 141 47.5
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.8e-20 104.0 227 54.2
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 9.0e-20 101.7 211 58.3
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 9.0e-20 101.7 141 48.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.5e-19 100.9 128 52.3
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.5e-19 100.9 252 58.7
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.5e-19 100.9 227 42.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.5e-19 100.9 145 49.0
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.0e-19 100.5 137 49.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.6e-19 100.1 179 66.5
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 4.5e-19 99.4 148 45.9
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 5.8e-19 99.0 229 56.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.3e-18 97.8 142 47.2
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.7e-18 97.4 149 45.6
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.8e-18 96.3 144 47.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.9e-18 95.9 220 48.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.1e-17 94.7 141 48.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.1e-17 94.7 152 42.1
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.1e-17 94.7 129 48.8
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 5.4e-17 92.4 186 66.1
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 7.1e-17 92.0 113 50.4
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 9.3e-17 91.7 151 42.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 9.3e-17 91.7 151 42.4
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 9.3e-17 91.7 142 45.8
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.2e-16 91.3 109 51.4
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.2e-16 91.3 135 47.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.6e-16 90.9 109 51.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.6e-16 90.9 143 46.2
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.6e-16 90.9 112 50.9
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.7e-16 90.1 141 44.0
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 6.0e-16 89.0 140 45.7
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 6.0e-16 89.0 135 45.2
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 6.0e-16 89.0 121 49.6
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.0e-15 88.2 139 45.3
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.3e-15 87.8 143 44.1
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.8e-15 87.4 142 44.4
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 3.0e-15 86.7 140 42.9
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 3.9e-15 86.3 133 42.9
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 5.1e-15 85.9 101 52.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 1.1e-14 84.7 137 41.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.5e-14 84.3 184 57.6
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.9e-14 84.0 184 57.6
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 3.3e-14 83.2 128 40.6
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.3e-14 83.2 94 55.3
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 3.3e-14 83.2 94 55.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 4.3e-14 82.8 184 57.1
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 7.4e-14 82.0 226 42.5
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 9.6e-14 81.6 133 41.4
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 9.6e-14 81.6 134 47.0
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 9.6e-14 81.6 99 52.5
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.3e-13 81.3 103 47.6
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.3e-13 81.3 145 41.4
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.6e-13 80.9 136 41.2
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.1e-13 80.5 187 56.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.1e-13 80.5 137 43.1
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.8e-13 80.1 108 46.3
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.8e-13 80.1 125 44.8
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 4.8e-13 79.3 118 44.1
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.4e-12 77.8 133 43.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.8e-12 77.4 131 40.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 9.0e-12 75.1 100 43.0
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 9.0e-12 75.1 100 43.0
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 9.0e-12 75.1 135 41.5
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.5e-11 74.3 136 41.9
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.5e-11 74.3 233 45.1
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.4e-11 73.2 128 37.5
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.4e-11 73.2 128 37.5
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 9.9e-11 71.6 123 43.1
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.2e-10 70.5 99 43.4
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-09 66.6 129 42.6
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 5.5e-09 65.9 125 38.4
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.3e-07 60.5 98 37.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.3e-07 60.5 200 33.0


User provided reference genes

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