Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 8.3e-90 333.6 155 100.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.3e-78 293.9 145 93.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.0e-76 290.0 145 92.4
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.0e-76 288.1 142 94.4
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.8e-76 287.3 143 93.0
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.6e-71 270.8 136 91.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.2e-67 260.0 145 82.1
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 1.6e-64 249.6 145 77.9
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 3.9e-63 245.0 153 73.9
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.5e-62 243.0 144 75.0
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.5e-62 242.3 145 77.2
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.3e-62 241.9 143 76.9
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 5.6e-62 241.1 144 76.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 2.1e-61 239.2 144 78.5
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 2.8e-61 238.8 154 71.4
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.1e-60 236.9 154 70.1
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.4e-60 236.5 127 82.7
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.8e-60 236.1 140 75.7
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.3e-60 235.7 150 73.3
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 3.1e-60 235.3 144 75.0
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 5.2e-60 234.6 145 74.5
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 6.8e-60 234.2 139 74.8
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.5e-59 233.0 148 71.6
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.0e-59 232.6 147 74.1
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 5.8e-59 231.1 147 74.1
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 7.5e-59 230.7 138 75.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.9e-59 230.3 121 85.1
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.3e-58 229.9 136 77.2
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.3e-58 229.9 147 74.1
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.2e-58 229.2 139 72.7
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.9e-58 228.8 147 73.5
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.9e-58 228.8 148 73.0
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 3.7e-58 228.4 140 75.7
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.7e-58 228.4 146 71.2
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 4.9e-58 228.0 141 75.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 4.9e-58 228.0 146 71.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.4e-58 227.6 147 72.8
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 6.4e-58 227.6 136 73.5
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.1e-57 226.9 150 70.7
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.1e-57 226.9 144 72.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.4e-57 226.5 139 74.1
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.9e-57 226.1 155 70.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.4e-57 225.7 135 74.8
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 3.2e-57 225.3 149 69.1
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 7.1e-57 224.2 148 70.3
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 7.1e-57 224.2 149 69.1
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 9.2e-57 223.8 155 70.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.7e-56 222.2 124 81.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.5e-56 221.9 135 73.3
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 3.5e-56 221.9 148 70.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 4.6e-56 221.5 143 71.3
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 6.0e-56 221.1 122 80.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 6.0e-56 221.1 147 68.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 7.8e-56 220.7 149 65.8
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.0e-55 220.3 149 67.8
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.3e-55 219.9 146 68.5
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 8.6e-55 217.2 139 71.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.1e-54 216.9 154 66.9
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.1e-54 216.9 142 69.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.1e-54 216.9 136 69.9
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.9e-54 216.1 146 68.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.9e-54 216.1 145 67.6
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.5e-54 215.7 141 67.4
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.5e-54 215.7 136 69.9
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 4.3e-54 214.9 136 71.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 4.3e-54 214.9 146 66.4
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.3e-54 214.9 145 66.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 5.6e-54 214.5 147 68.0
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 5.6e-54 214.5 136 69.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 9.5e-54 213.8 140 70.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 9.5e-54 213.8 139 67.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.2e-53 213.4 142 66.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.8e-53 212.2 140 69.3
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.6e-53 211.8 146 68.5
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 6.2e-53 211.1 127 75.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 6.2e-53 211.1 120 75.8
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.1e-52 210.3 136 69.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.1e-52 210.3 175 56.6
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.4e-52 209.1 137 67.2
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.4e-52 209.1 142 66.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 2.4e-52 209.1 142 64.8
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.4e-52 209.1 137 67.2
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.2e-51 206.8 119 77.3
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 4.4e-51 204.9 122 76.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.4e-51 204.9 135 69.6
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 4.4e-51 204.9 145 65.5
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 4.4e-51 204.9 148 63.5
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.3e-50 203.4 159 60.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.7e-50 203.0 132 69.7
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 2.9e-50 202.2 140 64.3
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 4.2e-49 198.4 127 70.9
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.6e-48 196.4 119 72.3
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.6e-48 196.4 119 72.3
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.0e-47 193.7 153 58.8
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.3e-47 193.4 127 64.6
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 6.6e-47 191.0 141 67.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.5e-46 189.9 109 76.1
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.3e-46 188.7 127 63.8
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 7.3e-46 187.6 130 62.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.1e-44 182.2 143 62.2
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 2.1e-37 159.5 85 80.0
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.6e-35 152.5 121 62.0
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.3e-34 150.2 81 80.2
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.8e-34 148.7 118 53.4
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.6e-32 143.3 117 53.0
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.9e-32 141.0 75 81.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.5e-30 136.0 135 51.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 3.7e-29 132.1 114 48.2
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 3.7e-29 132.1 96 56.2
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 2.9e-26 122.5 145 46.9
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 6.5e-26 121.3 121 52.1
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.4e-25 120.2 92 56.5
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 2.5e-25 119.4 92 56.5
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 5.5e-25 118.2 74 68.9
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 9.6e-22 107.5 63 74.6
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 2.8e-21 105.9 89 49.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.4e-20 102.8 93 45.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 4.5e-19 98.6 91 48.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 7.1e-17 91.3 92 45.7
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.1e-15 85.1 98 37.8
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.7e-15 84.7 77 54.5
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.6e-13 80.1 56 64.3
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 6.9e-12 74.7 63 54.0
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.5e-11 73.6 77 50.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.5e-10 67.8 39 74.4
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.5e-09 66.2 73 43.8
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 6.1e-08 61.6 37 67.6
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 3.9e-07 58.9 40 60.0
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.1e-07 58.5 88 39.8
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 9.7e-06 54.3 32 68.8


User provided reference genes

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