Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.0e-109 399.1 193 100.0
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 4.2e-99 364.8 192 92.2
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 9.4e-75 283.9 189 74.1
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 3.6e-66 255.4 192 67.7
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 1.3e-52 210.3 157 68.8
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-48 197.2 207 51.7
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.5e-48 196.8 207 51.7
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.5e-48 196.8 207 51.2
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.4e-48 195.7 207 50.2
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.4e-46 190.3 207 49.3
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 6.5e-44 181.4 199 49.7
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 6.3e-31 138.3 204 42.6
FAN15G1032 Fragaria x ananassa HOM05D005641 ORTHO05D211145 1.2e-24 117.5 131 51.1
RcHm_v2.0_Chr6g0253231 Rosa chinensis HOM05D005641 ORTHO05D046621 2.2e-23 113.2 113 55.8
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 8.6e-20 101.3 99 44.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.1e-19 100.9 97 45.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.9e-19 100.1 99 45.5
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 1.9e-19 100.1 99 43.4
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 3.3e-19 99.4 99 43.4
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.3e-19 99.4 99 43.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.3e-19 99.0 99 43.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 4.3e-19 99.0 99 42.4
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.3e-19 99.0 99 44.4
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 5.6e-19 98.6 98 43.9
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 9.5e-19 97.8 99 42.4
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 9.5e-19 97.8 99 42.4
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.2e-18 97.4 99 43.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-18 97.4 77 59.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.6e-18 97.1 99 43.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.6e-18 97.1 99 43.4
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.6e-18 97.1 100 43.0
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.1e-18 96.7 99 43.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.8e-18 96.3 98 42.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.6e-18 95.9 99 42.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 40.4
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 41.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 41.4
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 41.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 41.4
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 4.7e-18 95.5 99 43.4
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 6.2e-18 95.1 99 43.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 8.1e-18 94.7 99 41.4
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 8.1e-18 94.7 99 40.4
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 8.1e-18 94.7 94 42.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 8.1e-18 94.7 99 42.4
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.4e-17 94.0 99 42.4
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.8e-17 93.6 99 42.4
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.8e-17 93.6 99 41.4
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.8e-17 93.6 91 41.8
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.8e-17 93.6 99 42.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.3e-17 93.2 99 42.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.3e-17 93.2 100 42.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.1e-17 92.8 98 40.8
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 3.1e-17 92.8 99 40.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 3.1e-17 92.8 99 40.4
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 4.0e-17 92.4 99 39.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 4.0e-17 92.4 99 39.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 4.0e-17 92.4 99 39.4
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 4.0e-17 92.4 100 43.0
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 4.0e-17 92.4 102 41.2
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.2e-17 92.0 99 39.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 5.2e-17 92.0 99 41.4
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 6.8e-17 91.7 99 40.4
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 6.8e-17 91.7 99 39.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.8e-17 91.7 99 40.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.8e-17 91.7 91 44.0
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 6.8e-17 91.7 85 45.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 6.8e-17 91.7 97 43.3
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.9e-17 91.3 98 39.8
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.9e-17 91.3 99 41.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 8.9e-17 91.3 99 38.4
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.2e-16 90.9 98 39.8
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.5e-16 90.5 99 41.4
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.5e-16 90.5 99 40.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 40.4
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 39.4
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 39.4
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.0e-16 90.1 98 39.8
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.0e-16 90.1 91 40.7
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 40.4
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 40.4
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.0e-16 90.1 99 40.4
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.6e-16 89.7 99 40.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.4e-16 89.4 99 38.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 3.4e-16 89.4 91 40.7
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.4e-16 89.4 99 40.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.4e-16 89.4 99 38.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 3.4e-16 89.4 99 38.4
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.4e-16 89.0 99 38.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.4e-16 89.0 96 39.6
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 4.4e-16 89.0 102 38.2
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.8e-16 88.6 99 38.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.7e-15 87.0 99 40.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.2e-15 86.7 99 37.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.9e-15 86.3 94 39.4
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.7e-15 85.9 91 38.5
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.7e-15 85.9 99 39.4
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 3.7e-15 85.9 91 40.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.9e-15 85.5 99 38.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 4.9e-15 85.5 98 37.8
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 6.4e-15 85.1 88 38.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 6.4e-15 85.1 99 37.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.4e-15 85.1 99 39.4
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 6.4e-15 85.1 99 38.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.4e-14 84.0 99 36.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.9e-14 83.6 100 37.0
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 2.4e-14 83.2 100 37.0
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.4e-14 83.2 99 38.4
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.2e-14 82.8 99 37.4
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.2e-14 82.8 99 37.4
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.2e-13 80.9 92 43.5
FAN24G1172 Fragaria x ananassa HOM05D005641 ORTHO05D046621 3.5e-13 79.3 75 58.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.1e-11 74.3 67 41.8
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.1e-11 74.3 69 43.5
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.3e-11 72.8 61 45.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.8e-10 69.7 126 28.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 8.1e-10 68.2 102 34.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.1e-09 67.8 99 32.3
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.8e-09 67.0 39 66.7
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.4e-06 57.4 99 30.3


User provided reference genes

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