Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 9.7e-112 406.8 195 100.0
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.7e-87 325.1 218 77.5
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.2e-85 320.1 195 81.5
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.5e-83 311.2 195 77.9
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 9.4e-83 310.5 195 76.9
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 5.2e-81 304.7 194 77.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.2e-79 299.3 195 76.9
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.8e-79 298.1 198 79.3
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.7e-77 292.4 199 73.4
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.0e-76 288.1 207 74.9
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 8.0e-74 280.8 266 57.9
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.3e-73 279.3 197 70.6
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 8.8e-73 277.3 191 72.8
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 8.8e-73 277.3 192 70.3
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 7.5e-72 274.2 192 67.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.7e-71 273.1 193 71.0
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 3.7e-71 271.9 199 69.3
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.7e-71 271.9 197 67.5
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 6.3e-71 271.2 191 71.2
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.4e-70 270.0 201 66.7
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.4e-70 270.0 125 99.2
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.8e-70 269.6 195 66.7
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.4e-70 269.2 196 67.3
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.4e-70 269.2 195 69.2
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 4.1e-70 268.5 194 67.5
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.4e-70 268.1 193 65.8
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 9.2e-70 267.3 197 68.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.6e-69 266.5 194 67.5
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.7e-69 265.8 198 68.7
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.7e-69 265.8 191 69.1
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.5e-69 265.4 190 70.0
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 4.5e-69 265.0 213 65.3
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.7e-68 263.1 202 65.3
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.3e-68 262.7 195 68.2
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 3.8e-68 261.9 192 67.2
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 3.8e-68 261.9 194 67.0
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 6.6e-68 261.2 197 68.0
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 8.6e-68 260.8 203 64.5
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.1e-67 260.4 189 69.3
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.9e-67 259.6 216 62.0
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.5e-67 259.2 194 67.5
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.5e-67 259.2 190 68.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.5e-67 259.2 190 68.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.5e-67 259.2 190 68.9
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.3e-67 258.8 194 64.9
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.3e-67 258.8 194 65.5
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 7.3e-67 257.7 194 64.9
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 1.2e-66 256.9 198 66.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.6e-66 256.5 193 67.9
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.8e-66 255.8 193 67.4
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.8e-66 255.8 193 65.8
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 8.0e-66 254.2 213 62.9
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.4e-65 253.4 194 67.5
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.4e-65 253.4 202 63.4
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-65 253.4 199 64.3
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.4e-65 253.4 192 63.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.3e-65 252.7 194 67.0
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.0e-65 251.9 187 66.3
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.2e-65 251.5 227 56.4
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 6.8e-65 251.1 199 65.3
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 8.9e-65 250.8 193 63.7
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.0e-64 249.6 227 56.4
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 3.4e-64 248.8 194 62.9
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 4.4e-64 248.4 191 63.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 4.4e-64 248.4 189 64.6
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.3e-63 246.9 194 64.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.7e-63 246.5 194 63.4
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 2.9e-63 245.7 202 63.4
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.9e-63 245.7 200 62.0
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 6.4e-63 244.6 195 64.6
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 9.2e-62 240.7 196 61.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.5e-61 238.8 200 60.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.3e-60 236.9 137 78.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 3.9e-60 235.3 123 86.2
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.5e-59 232.6 186 58.6
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.3e-59 232.3 191 60.7
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 7.3e-59 231.1 191 61.3
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.3e-59 231.1 188 61.7
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.3e-59 231.1 123 82.1
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.6e-58 229.9 191 57.6
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 1.6e-58 229.9 174 67.8
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.8e-58 229.2 186 57.5
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.8e-58 229.2 127 86.6
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.1e-57 227.3 126 81.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.4e-57 226.9 205 60.5
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-57 226.9 199 61.8
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 8.9e-57 224.2 254 50.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.5e-56 223.4 122 81.1
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.4e-56 221.9 123 78.9
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.9e-55 219.2 195 54.4
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.9e-55 218.4 195 54.4
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.2e-54 215.7 181 59.7
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.0e-53 213.0 126 71.4
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.5e-51 206.8 192 56.8
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.5e-51 206.8 256 47.7
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 3.3e-51 205.7 135 81.5
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.8e-49 199.9 159 66.7
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 3.1e-49 199.1 121 68.6
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 4.4e-48 195.3 163 61.3
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.4e-46 189.5 118 72.0
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 3.2e-46 189.1 224 43.8
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 5.4e-46 188.3 114 73.7
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 1.7e-44 183.3 93 84.9
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.5e-43 180.3 146 56.8
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 7.3e-43 177.9 163 57.1
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.6e-42 175.6 196 50.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.8e-40 168.3 201 46.8
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 9.9e-40 167.5 115 57.4
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 9.9e-40 167.5 127 63.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.2e-39 166.4 176 50.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.6e-37 160.2 114 61.4
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 2.7e-37 159.5 166 44.0
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.0e-36 157.5 157 57.3
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.3e-35 152.1 131 62.6
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.4e-32 142.1 261 37.2
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.3e-30 134.4 156 51.9
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.1e-29 133.3 102 55.9
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.7e-29 132.9 63 92.1
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.3e-26 124.0 106 47.2
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.1e-26 123.2 96 59.4
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.8e-26 122.9 135 49.6
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 4.0e-25 119.0 100 45.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.5e-24 117.1 96 52.1
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.0e-24 116.7 60 83.3
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 3.4e-24 115.9 119 46.2
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.9e-24 114.4 60 78.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 2.2e-23 113.2 113 57.5
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.4e-22 110.5 125 55.2
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 7.9e-21 104.8 94 45.7
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.4e-17 93.2 93 39.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 3.1e-17 92.8 104 43.3
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.9e-15 86.3 114 43.9
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 6.4e-15 85.1 113 47.8
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.3e-14 81.3 115 42.6
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 6.0e-13 78.6 40 82.5
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 3.9e-12 75.9 94 50.0
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 6.2e-10 68.6 36 75.0
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 6.2e-10 68.6 36 75.0
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 4.0e-09 65.9 110 37.3
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 2.2e-07 60.1 109 36.7
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 3.8e-07 59.3 120 37.5


User provided reference genes

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