Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 0.0e+00 1309.3 814 100.0
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 0.0e+00 1080.9 819 86.3
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 0.0e+00 1075.5 817 86.0
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 9.4e-302 1040.0 817 84.5
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 5.6e-246 854.7 842 71.7
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 3.5e-216 755.7 891 64.8
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 4.8e-197 692.2 852 63.1
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 7.4e-190 668.3 919 52.4
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.2e-189 666.8 914 53.9
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 3.7e-181 639.4 830 57.3
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 8.5e-178 628.2 872 51.5
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 4.7e-176 622.5 525 85.0
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.0e-171 607.1 852 55.5
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.7e-171 606.7 858 54.0
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.0e-167 594.7 873 52.9
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 7.8e-163 578.6 844 54.9
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.8e-160 570.1 852 51.4
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 6.1e-160 568.9 1004 47.2
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 2.6e-158 563.5 845 53.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.7e-157 560.8 829 53.7
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 4.1e-156 556.2 817 51.8
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.5e-153 547.7 858 49.0
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 5.8e-150 535.8 827 49.9
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 7.5e-150 535.4 827 49.8
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.1e-148 531.6 831 50.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.6e-147 527.7 898 47.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 6.2e-144 515.8 849 51.0
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.6e-139 501.1 869 46.4
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 5.1e-138 496.1 799 50.2
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 5.8e-134 482.6 812 48.8
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 4.9e-133 479.6 816 50.9
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.6e-131 474.6 820 49.0
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.5e-131 473.4 838 48.1
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 3.9e-130 469.9 833 46.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.1e-129 468.4 880 43.6
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 6.2e-128 462.6 797 47.7
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 4.0e-127 459.9 820 49.3
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 4.0e-127 459.9 822 49.8
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 6.9e-127 459.1 880 49.0
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 9.9e-126 455.3 833 49.7
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.3e-125 454.9 856 43.9
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 8.4e-125 452.2 884 44.0
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.4e-124 450.7 944 40.6
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.2e-124 450.3 799 47.2
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 9.3e-124 448.7 834 45.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 2.3e-122 444.1 855 48.8
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.9e-121 441.0 896 42.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 6.2e-120 436.0 832 45.2
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.8e-119 434.5 443 59.6
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.3e-119 433.0 814 41.5
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.2e-118 431.8 884 45.1
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.6e-118 430.6 857 48.7
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.7e-117 427.9 462 57.4
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 4.2e-116 423.3 819 48.7
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 7.1e-116 422.5 826 42.1
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.5e-113 414.1 880 44.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.3e-113 413.7 913 42.2
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 5.6e-113 412.9 864 44.9
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 4.8e-112 409.8 862 42.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.1e-111 407.1 969 38.3
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 3.1e-111 407.1 707 43.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 8.4e-109 399.1 853 42.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.3e-106 391.0 764 41.8
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.1e-106 389.8 760 41.8
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.5e-105 388.3 730 49.3
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.9e-105 387.9 803 44.1
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.9e-105 387.9 836 43.7
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 7.4e-105 386.0 773 42.4
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.8e-104 384.0 815 44.5
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 6.2e-104 382.9 851 40.9
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.4e-103 380.9 870 41.1
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 5.8e-102 376.3 817 39.2
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 2.5e-100 370.9 810 41.9
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 4.6e-99 366.7 808 42.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 4.6e-99 366.7 812 36.8
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.0e-98 365.5 813 42.6
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.3e-98 365.2 422 53.3
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 3.3e-97 360.5 820 42.3
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 8.2e-96 355.9 776 45.2
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.4e-95 355.1 822 37.0
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 2.4e-95 354.4 836 40.4
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.0e-93 349.0 404 56.4
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 2.2e-93 347.8 897 40.7
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 5.0e-93 346.7 812 41.0
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 5.0e-93 346.7 809 43.5
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 8.5e-93 345.9 421 53.9
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 4.2e-92 343.6 940 37.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 6.7e-90 336.3 895 37.8
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 6.3e-88 329.7 460 47.6
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 5.3e-87 326.6 816 41.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.1e-84 318.9 431 47.6
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 8.8e-82 309.3 483 44.9
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.0e-81 308.1 832 36.7
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.3e-77 295.4 438 47.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 7.2e-76 289.7 803 38.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 6.1e-75 286.6 429 46.9
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.0e-45 189.5 149 70.5
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.6e-45 186.4 630 30.5
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.6e-45 186.4 630 30.5
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.1e-44 186.0 168 62.5
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.1e-44 186.0 652 36.7
RcHm_v2.0_Chr4g0421911 Rosa chinensis HOM05D006481 ORTHO05D008160 1.5e-44 185.7 280 55.4
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.6e-43 182.2 325 43.1
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 4.0e-42 177.6 112 82.1
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 3.2e-39 167.9 111 81.1
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.7e-35 154.1 904 26.7
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 2.3e-34 151.8 339 38.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 2.1e-30 138.7 416 33.2
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 7.8e-30 136.7 132 62.1
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.6e-28 130.6 167 52.1
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 5.8e-25 120.6 240 40.8
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.2e-23 114.8 170 44.1
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 6.6e-21 107.1 418 32.1
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 8.1e-19 100.1 268 45.1
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 5.8e-17 94.0 62 72.6
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 3.5e-14 84.7 140 47.1
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 9.9e-09 66.6 105 41.0
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 9.9e-09 66.6 205 30.2
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 4.2e-07 61.2 51 72.5
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 5.4e-07 60.8 43 67.4
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 2.7e-06 58.5 35 77.1


User provided reference genes

Program Settings