Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 1.3e-64 249.6 132 100.0
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 7.6e-60 233.8 132 92.4
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 9.9e-60 233.4 132 91.7
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 2.4e-50 202.2 132 80.3
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 5.5e-50 201.1 132 81.1
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 1.3e-40 169.9 132 68.9
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 1.8e-40 169.5 133 69.9
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 1.3e-38 163.3 148 64.2
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 3.7e-38 161.8 135 67.4
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 9.0e-37 157.1 148 64.2
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 4.5e-36 154.8 133 62.4
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 7.6e-36 154.1 135 65.9
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 1.7e-35 152.9 139 64.7
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 2.2e-35 152.5 141 64.5
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 3.8e-35 151.8 136 64.0
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 5.0e-35 151.4 133 64.7
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.1e-34 150.2 147 59.2
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.4e-34 149.8 147 59.2
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 4.2e-34 148.3 124 64.5
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 7.2e-34 147.5 132 63.6
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 9.3e-34 147.1 140 62.1
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 1.8e-32 142.9 135 61.5
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 3.9e-32 141.7 133 59.4
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 6.7e-32 141.0 135 62.2
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 1.1e-31 140.2 133 60.2
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 1.1e-31 140.2 133 60.2
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 3.3e-31 138.7 136 60.3
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 9.7e-31 137.1 127 59.1
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 1.3e-30 136.7 145 58.6
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 1.7e-30 136.3 137 60.6
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 3.7e-30 135.2 135 59.3
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 3.7e-30 135.2 133 55.6
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 6.3e-30 134.4 123 63.4
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 8.2e-30 134.0 133 57.1
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 8.2e-30 134.0 127 58.3
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 8.2e-30 134.0 175 49.7
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 1.4e-29 133.3 133 57.1
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 1.4e-29 133.3 124 56.5
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.8e-29 132.9 127 57.5
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 1.8e-29 132.9 129 58.9
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 1.8e-29 132.9 133 56.4
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 2.4e-29 132.5 123 61.8
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 1.2e-28 130.2 119 63.0
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 2.0e-28 129.4 135 57.8
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 5.9e-28 127.9 131 57.3
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 7.7e-28 127.5 87 72.4
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-27 126.7 136 56.6
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 2.2e-27 125.9 123 56.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.5e-27 124.4 138 55.8
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 1.1e-26 123.6 134 55.2
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 1.1e-26 123.6 134 55.2
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 3.2e-26 122.1 95 66.3
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 5.5e-26 121.3 134 53.7
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 5.5e-26 121.3 134 54.5
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 5.5e-26 121.3 138 55.1
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 7.2e-26 120.9 134 54.5
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 9.4e-26 120.6 118 57.6
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 1.2e-25 120.2 124 53.2
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 2.7e-25 119.0 130 56.9
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 1.4e-24 116.7 125 55.2
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 2.3e-24 115.9 125 55.2
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 5.1e-24 114.8 129 56.6
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 5.1e-24 114.8 114 55.3
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 1.1e-23 113.6 126 56.3
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 1.1e-23 113.6 128 54.7
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 1.1e-23 113.6 114 54.4
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 2.6e-23 112.5 131 51.9
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 3.3e-23 112.1 120 55.8
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 1.7e-22 109.8 130 52.3
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 8.2e-22 107.5 138 52.2
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.4e-21 106.7 123 52.0
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 2.4e-21 105.9 163 44.8
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 2.4e-21 105.9 127 52.0
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 4.1e-21 105.1 106 56.6
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 1.5e-20 103.2 80 66.2
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 1.5e-20 103.2 119 50.4
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 1.5e-20 103.2 68 77.9
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 1.5e-20 103.2 98 61.2
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 1.0e-19 100.5 87 60.9
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 1.3e-19 100.1 125 48.0
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 2.2e-19 99.4 135 48.1
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 8.5e-19 97.4 125 52.0
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.4e-18 96.7 86 62.8
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 1.6e-17 93.2 129 45.0
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 1.6e-17 93.2 129 45.0
Manes.07G054000 Manihot esculenta HOM05D007571 ORTHO05D009439 1.0e-16 90.5 89 65.2
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.4e-16 90.1 60 68.3
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 2.3e-16 89.4 63 65.1
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 3.9e-16 88.6 59 69.5
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 5.2e-16 88.2 67 61.2
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 5.2e-16 88.2 86 58.1
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 2.0e-15 86.3 81 58.0
Potri.009G086400 Populus trichocarpa HOM05D007571 ORTHO05D009439 6.3e-14 81.3 85 58.8
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 8.2e-14 80.9 58 69.0
Aa31LG10G4150 Aethionema arabicum HOM05D007571 ORTHO05D009439 7.7e-12 74.3 90 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 1.0e-11 73.9 89 46.1
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 6.5e-11 71.2 120 38.3
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 2.7e-09 65.9 63 54.0
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.0e-08 63.9 46 67.4


User provided reference genes

Program Settings