Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-81 306.2 162 100.0
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 2.9e-77 292.0 162 95.1
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 4.2e-76 288.1 162 94.4
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.7e-61 239.6 161 85.1
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.4e-61 237.3 161 84.5
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.1e-60 236.9 161 84.5
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.3e-60 233.8 161 83.9
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.9e-59 230.7 161 83.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.5e-57 225.7 161 81.4
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.2e-56 220.7 161 81.4
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-55 219.9 132 88.6
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 5.1e-50 201.4 151 77.5
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.9e-49 199.5 162 69.8
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 6.3e-48 194.5 164 68.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 8.2e-48 194.1 146 75.3
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-47 192.6 129 81.4
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-47 192.6 129 79.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.6e-46 189.1 164 67.1
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 7.7e-46 187.6 167 65.9
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.5e-41 173.3 166 60.2
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 4.3e-41 171.8 163 62.0
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.4e-41 171.0 168 59.5
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 9.7e-41 170.6 166 62.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 6.3e-40 167.9 170 57.6
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.4e-39 166.8 168 60.1
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.8e-39 166.4 166 62.0
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.4e-39 166.0 164 59.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.4e-39 166.0 167 60.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.1e-39 165.2 168 60.1
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 4.1e-39 165.2 164 59.1
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 5.9e-38 161.4 163 60.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.9e-38 161.4 168 57.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 5.9e-38 161.4 163 61.3
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.7e-37 159.8 172 57.0
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.7e-37 159.8 167 58.7
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.2e-36 155.2 164 58.5
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 5.5e-36 154.8 166 58.4
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.2e-35 153.7 178 53.9
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.1e-35 152.9 165 57.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.4e-34 150.2 160 56.9
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.5e-33 146.7 163 55.2
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.5e-33 146.7 161 55.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 2.0e-33 146.4 120 65.0
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.0e-33 146.4 169 55.0
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-33 145.6 118 74.6
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 5.7e-33 144.8 163 55.8
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 7.4e-33 144.4 175 52.0
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 7.4e-33 144.4 166 53.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.7e-32 143.3 167 56.3
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.2e-32 142.9 165 55.2
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.8e-32 142.5 163 54.6
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 8.2e-32 141.0 171 53.8
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.4e-31 139.4 166 53.6
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 5.3e-31 138.3 121 62.8
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 7.0e-31 137.9 117 63.2
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 9.1e-31 137.5 170 51.2
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.2e-30 137.1 167 52.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.2e-30 137.1 171 53.2
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.6e-30 136.7 167 53.9
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.9e-30 134.8 165 52.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 7.7e-30 134.4 165 52.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.0e-29 134.0 165 52.7
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.2e-29 132.9 171 52.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 5.0e-29 131.7 170 51.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 6.5e-29 131.3 164 51.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 8.5e-29 131.0 176 48.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.5e-29 131.0 169 52.7
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.1e-28 130.6 165 51.5
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.5e-28 130.2 120 58.3
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 1.5e-28 130.2 161 49.7
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.9e-28 129.8 121 57.0
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.9e-28 129.8 118 61.0
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 3.2e-28 129.0 118 60.2
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 3.2e-28 129.0 118 60.2
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.2e-28 129.0 118 60.2
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.2e-28 128.6 166 48.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.2e-28 128.6 115 59.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.5e-28 128.3 166 52.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 7.2e-28 127.9 169 49.7
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 9.4e-28 127.5 165 51.5
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.2e-27 127.1 164 50.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.1e-27 126.3 167 51.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.1e-27 126.3 111 61.3
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.7e-27 125.9 109 61.5
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.7e-27 125.9 170 54.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 3.6e-27 125.6 115 62.6
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 4.7e-27 125.2 170 50.6
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 6.1e-27 124.8 164 48.8
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 6.1e-27 124.8 164 48.8
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 6.1e-27 124.8 164 48.8
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 8.0e-27 124.4 116 61.2
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.0e-26 124.0 115 62.6
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.4e-26 123.6 164 49.4
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.4e-26 123.6 164 48.8
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.4e-26 123.6 164 48.8
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.4e-26 123.6 167 49.1
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.4e-26 123.6 163 50.3
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.8e-26 123.2 160 48.8
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.0e-26 122.5 115 60.9
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.0e-26 122.1 166 47.6
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 5.2e-26 121.7 166 50.0
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.1e-25 120.6 171 48.0
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.1e-25 120.6 166 47.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 1.5e-25 120.2 161 47.2
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 5.7e-25 118.2 123 59.3
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 7.5e-25 117.9 166 50.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.3e-24 117.1 115 53.0
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 2.2e-24 116.3 167 47.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.2e-24 116.3 163 48.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 2.8e-24 115.9 166 47.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 4.8e-24 115.2 163 49.1
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.1e-23 114.0 167 47.9
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 4.1e-23 112.1 179 46.4
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.6e-22 110.2 115 53.0
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 2.7e-22 109.4 125 53.6
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 3.5e-22 109.0 150 50.0
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.5e-22 108.6 116 56.9
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.5e-21 104.8 116 56.0
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.2e-20 102.4 163 44.2
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 6.1e-19 98.2 122 50.8
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.2e-17 94.0 162 41.4
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.0e-17 93.2 168 42.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.8e-16 89.4 106 48.1
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.3e-16 88.2 162 41.4
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 2.4e-15 86.3 125 43.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 3.1e-15 85.9 74 60.8
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 5.4e-15 85.1 122 41.8
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.3e-13 80.5 126 46.0
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.0e-13 78.6 83 50.6
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.1e-11 73.2 135 41.5
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 3.6e-11 72.4 65 58.5
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.4e-10 70.5 182 37.4


User provided reference genes

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