Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.6e-30 134.8 71 100.0
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.5e-17 92.4 67 80.6
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.3e-17 90.9 67 77.6
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.3e-17 90.1 67 76.1
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.5e-17 89.7 67 76.1
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.1e-16 86.7 67 74.6
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.1e-15 86.3 50 96.0
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.9e-13 78.2 67 70.1
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.2e-12 74.7 70 65.7
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 5.4e-12 73.9 62 66.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 9.2e-12 73.2 62 67.7
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 7.8e-11 70.1 62 64.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.9e-10 67.8 57 68.4
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.1e-10 67.4 57 66.7
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.1e-10 67.4 57 66.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 6.6e-10 67.0 57 68.4
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 6.6e-10 67.0 67 59.7
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 8.6e-10 66.6 57 66.7
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 8.6e-10 66.6 57 64.9
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.5e-09 65.9 57 63.2
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.5e-09 65.9 57 68.4
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.9e-09 65.5 57 63.2
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.9e-09 65.5 60 65.0
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.9e-09 65.5 57 66.7
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 2.5e-09 65.1 60 61.7
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.5e-09 65.1 60 65.0
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 3.3e-09 64.7 63 61.9
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.3e-09 64.7 57 66.7
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.3e-09 64.7 57 66.7
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.3e-09 64.3 59 66.1
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.3e-09 64.3 59 66.1
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 4.3e-09 64.3 57 64.9
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 4.3e-09 64.3 59 62.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.6e-09 63.9 59 64.4
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 5.6e-09 63.9 57 63.2
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 7.3e-09 63.5 57 64.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.3e-09 63.5 59 64.4
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 7.3e-09 63.5 62 59.7
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 9.5e-09 63.2 59 62.7
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 9.5e-09 63.2 59 62.7
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 9.5e-09 63.2 66 59.1
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 9.5e-09 63.2 60 63.3
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 9.5e-09 63.2 57 64.9
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 9.5e-09 63.2 59 61.0
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.2e-08 62.8 57 66.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.2e-08 62.8 57 61.4
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.2e-08 62.8 57 61.4
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-08 62.8 60 60.0
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.2e-08 62.8 60 60.0
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-08 62.8 67 53.7
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-08 62.8 67 53.7
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-08 62.8 67 53.7
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.2e-08 62.8 62 59.7
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.2e-08 62.8 57 64.9
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.2e-08 62.8 57 66.7
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.6e-08 62.4 57 63.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.6e-08 62.4 61 59.0
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.6e-08 62.4 61 59.0
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.6e-08 62.4 61 59.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.6e-08 62.4 59 62.7
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 66.7
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 66.7
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.1e-08 62.0 61 59.0
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 66.7
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 63.2
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-08 62.0 59 61.0
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 66.7
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.1e-08 62.0 67 55.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.1e-08 62.0 57 63.2
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.8e-08 61.6 57 59.6
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.8e-08 61.6 57 61.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.8e-08 61.6 57 63.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.8e-08 61.6 59 62.7
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.8e-08 61.6 57 66.7
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.8e-08 61.6 56 58.9
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.6e-08 61.2 57 59.6
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.6e-08 61.2 59 61.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.6e-08 61.2 59 61.0
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 3.6e-08 61.2 57 61.4
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 4.7e-08 60.8 60 58.3
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 4.7e-08 60.8 61 62.3
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.7e-08 60.8 59 61.0
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.7e-08 60.8 57 63.2
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 6.2e-08 60.5 59 61.0
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 6.2e-08 60.5 59 64.4
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 6.2e-08 60.5 59 61.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 6.2e-08 60.5 57 63.2
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 6.2e-08 60.5 57 61.4
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 64.9
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 64.9
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 64.9
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 64.9
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 8.1e-08 60.1 61 60.7
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 61.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 8.1e-08 60.1 57 61.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.1e-07 59.7 57 63.2
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.1e-07 59.7 57 59.6
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.1e-07 59.7 57 59.6
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.1e-07 59.7 56 57.1
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.4e-07 59.3 57 63.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.4e-07 59.3 57 63.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.4e-07 59.3 57 63.2
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-07 59.3 57 63.2
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-07 59.3 57 63.2
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.4e-07 59.3 60 58.3
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.4e-07 59.3 60 58.3
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.4e-07 59.3 60 58.3
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.4e-07 59.3 61 57.4
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.8e-07 58.9 57 63.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.8e-07 58.9 57 63.2
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.8e-07 58.9 57 61.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.8e-07 58.9 60 58.3
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-07 58.9 61 57.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.4e-07 58.5 60 58.3
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 2.4e-07 58.5 57 59.6
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 3.1e-07 58.2 59 59.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 5.2e-07 57.4 57 61.4
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 5.2e-07 57.4 57 61.4
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 5.2e-07 57.4 57 61.4
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.2e-07 57.4 61 57.4
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 6.8e-07 57.0 57 59.6
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 6.8e-07 57.0 43 72.1
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 6.8e-07 57.0 57 59.6
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 6.8e-07 57.0 59 59.3
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 6.8e-07 57.0 57 63.2
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 6.8e-07 57.0 56 58.9
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 8.9e-07 56.6 59 57.6
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.2e-06 56.2 57 57.9
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.5e-06 55.8 57 59.6
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.5e-06 55.8 56 60.7
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.0e-06 55.5 41 75.6
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-06 55.5 41 75.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.0e-06 55.5 54 59.3
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.0e-06 55.5 63 55.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.6e-06 55.1 57 57.9
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.6e-06 55.1 61 52.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.6e-06 55.1 61 52.5
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 2.6e-06 55.1 56 57.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.4e-06 54.7 40 72.5
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.4e-06 54.7 60 50.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 4.4e-06 54.3 57 57.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 7.6e-06 53.5 57 57.9
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 9.9e-06 53.1 61 52.5
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 9.9e-06 53.1 47 70.2


User provided reference genes

Program Settings