Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.2e-18 94.7 53 100.0
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 9.3e-17 89.4 50 100.0
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.7e-16 87.8 50 96.0
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.0e-16 86.7 50 94.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.0e-16 86.7 50 94.0
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.3e-15 85.5 50 96.0
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 5.1e-15 83.6 50 92.0
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 5.3e-12 73.6 50 84.0
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 7.6e-11 69.7 45 82.2
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 9.9e-11 69.3 53 77.4
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 6.4e-10 66.6 45 80.0
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.1e-09 65.9 45 80.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 7.1e-09 63.2 50 72.0
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 7.1e-09 63.2 41 80.5
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 9.3e-09 62.8 41 82.9
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 9.3e-09 62.8 41 80.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.2e-08 62.4 41 82.9
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.2e-08 62.4 41 82.9
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.6e-08 62.0 41 78.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.6e-08 62.0 41 80.5
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.1e-08 61.6 43 76.7
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.1e-08 61.6 41 78.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.1e-08 61.6 43 79.1
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.7e-08 61.2 41 80.5
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.5e-08 60.8 41 78.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 3.5e-08 60.8 42 78.6
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 3.5e-08 60.8 43 79.1
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.5e-08 60.8 43 79.1
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.6e-08 60.5 42 81.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.6e-08 60.5 42 81.0
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.6e-08 60.5 41 80.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 4.6e-08 60.5 41 82.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 6.0e-08 60.1 46 73.9
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.0e-08 60.1 43 74.4
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.0e-08 60.1 43 74.4
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.0e-08 60.1 50 66.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 6.0e-08 60.1 50 66.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 6.0e-08 60.1 50 66.0
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.0e-08 60.1 41 78.0
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 7.9e-08 59.7 43 76.7
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.9e-08 59.7 42 78.6
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.9e-08 59.7 41 78.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.9e-08 59.7 42 78.6
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 7.9e-08 59.7 42 76.2
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.0e-07 59.3 43 72.1
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.0e-07 59.3 44 72.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.0e-07 59.3 41 78.0
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.3e-07 58.9 41 75.6
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.3e-07 58.9 41 78.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-07 58.9 41 75.6
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.3e-07 58.9 41 78.0
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.3e-07 58.9 50 66.0
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.3e-07 58.9 41 75.6
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.3e-07 58.9 44 72.7
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.3e-07 58.9 44 72.7
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.3e-07 58.9 44 72.7
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.8e-07 58.5 42 76.2
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 80.5
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 80.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 80.5
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 80.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.8e-07 58.5 42 76.2
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.8e-07 58.5 42 76.2
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 80.5
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.3e-07 58.2 49 69.4
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.3e-07 58.2 43 74.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.3e-07 58.2 41 75.6
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.3e-07 58.2 42 78.6
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.0e-07 57.8 43 72.1
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.0e-07 57.8 43 72.1
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.0e-07 57.8 43 72.1
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.0e-07 57.8 41 75.6
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.0e-07 57.8 41 75.6
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.0e-07 57.8 41 75.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.0e-07 57.8 42 76.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.9e-07 57.4 42 78.6
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.9e-07 57.4 43 72.1
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 3.9e-07 57.4 44 75.0
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.9e-07 57.4 41 75.6
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 3.9e-07 57.4 41 80.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.9e-07 57.4 41 75.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 3.9e-07 57.4 42 73.8
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.1e-07 57.0 42 76.2
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.1e-07 57.0 43 72.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 5.1e-07 57.0 42 76.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 5.1e-07 57.0 41 75.6
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 5.1e-07 57.0 42 73.8
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.1e-07 57.0 44 70.5
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.1e-07 57.0 41 75.6
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 5.1e-07 57.0 41 73.2
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.1e-07 57.0 45 68.9
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 78.0
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 78.0
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 78.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 78.0
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 78.0
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 6.7e-07 56.6 44 72.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.7e-07 56.6 44 70.5
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 6.7e-07 56.6 43 72.1
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 6.7e-07 56.6 42 76.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 8.7e-07 56.2 41 75.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 8.7e-07 56.2 43 72.1
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.7e-07 56.2 43 72.1
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.1e-06 55.8 41 75.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 75.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.1e-06 55.8 45 66.7
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.5e-06 55.5 41 75.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.5e-06 55.5 41 75.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-06 55.5 41 75.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.5e-06 55.5 43 69.8
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.5e-06 55.5 41 73.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.5e-06 55.5 41 73.2
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.9e-06 55.1 42 71.4
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.5e-06 54.7 40 75.0
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-06 54.7 40 75.0
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.5e-06 54.7 44 70.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.3e-06 54.3 42 73.8
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 4.3e-06 53.9 43 65.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.3e-06 53.9 43 62.8
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 5.6e-06 53.5 41 70.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 7.4e-06 53.1 41 73.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 7.4e-06 53.1 41 73.2
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 7.4e-06 53.1 43 72.1
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.6e-06 52.8 44 63.6
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.6e-06 52.8 44 63.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 9.6e-06 52.8 37 73.0


User provided reference genes

Program Settings