Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.9e-57 225.7 122 100.0
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 5.6e-57 224.2 122 98.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.2e-56 223.0 122 97.5
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.0e-55 219.9 122 96.7
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.4e-52 208.8 122 91.8
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.0e-51 205.7 125 90.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.5e-51 204.9 117 91.5
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 3.3e-49 198.4 117 89.7
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.3e-49 198.0 117 89.7
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 5.6e-49 197.6 122 86.1
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 92.0
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 91.2
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 89.6
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.1e-48 195.7 114 89.5
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 90.3
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 3.6e-48 194.9 113 89.4
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 4.7e-48 194.5 118 88.1
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.7e-48 194.5 115 89.6
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 4.7e-48 194.5 115 89.6
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 6.2e-48 194.1 113 90.3
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 8.0e-48 193.7 116 88.8
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.0e-48 193.7 115 87.8
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 8.0e-48 193.7 113 90.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-47 193.4 113 92.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-47 193.4 114 89.5
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-47 193.4 114 89.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-47 193.4 114 89.5
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.1e-47 193.4 114 88.6
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.4e-47 193.0 114 89.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-47 193.0 122 82.8
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-47 193.0 122 82.8
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-47 193.0 122 82.8
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.8e-47 192.6 115 86.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.8e-47 192.6 116 87.9
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.8e-47 192.6 116 87.9
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.8e-47 192.6 116 87.9
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.3e-47 192.2 114 88.6
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.3e-47 192.2 114 88.6
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.3e-47 192.2 122 83.6
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.3e-47 192.2 113 92.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.3e-47 192.2 113 89.4
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 91.2
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 91.2
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 91.2
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 89.4
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 5.2e-47 191.0 115 87.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 5.2e-47 191.0 113 87.6
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.2e-47 191.0 113 88.5
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.2e-47 191.0 114 88.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 6.8e-47 190.7 114 88.6
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 6.8e-47 190.7 113 89.4
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 6.8e-47 190.7 114 88.6
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.8e-47 190.7 115 87.8
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.8e-47 190.7 116 87.1
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.8e-47 190.7 113 89.4
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 8.9e-47 190.3 114 88.6
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 8.9e-47 190.3 113 89.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 8.9e-47 190.3 112 89.3
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 90.3
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 90.3
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 89.4
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.2e-46 189.9 121 84.3
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 89.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 89.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 89.4
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.5e-46 189.5 116 87.1
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 89.4
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 89.4
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.0e-46 189.1 114 86.8
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 87.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 88.5
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 89.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 88.5
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 89.4
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 88.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.4e-46 188.3 113 88.5
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.4e-46 188.3 116 85.3
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 3.4e-46 188.3 117 83.8
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.4e-46 188.3 113 87.6
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.4e-46 188.0 114 88.6
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 4.4e-46 188.0 116 87.1
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 4.4e-46 188.0 117 83.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.4e-46 188.0 113 86.7
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 4.4e-46 188.0 114 86.8
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 5.8e-46 187.6 114 86.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 5.8e-46 187.6 113 88.5
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 5.8e-46 187.6 113 87.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 7.5e-46 187.2 115 86.1
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 7.5e-46 187.2 116 86.2
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 9.8e-46 186.8 114 87.7
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.3e-45 186.4 114 85.1
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 85.8
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 85.8
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.3e-45 186.4 115 82.6
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.7e-45 186.0 114 86.0
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.2e-45 185.7 113 85.8
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.9e-45 185.3 113 86.7
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.9e-45 185.3 115 86.1
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.9e-45 185.3 115 84.3
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 3.7e-45 184.9 113 87.6
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 4.9e-45 184.5 118 83.9
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 4.9e-45 184.5 115 86.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.9e-45 184.5 115 81.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.4e-44 182.2 113 85.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.4e-44 182.2 113 84.1
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.4e-44 182.2 116 81.9
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.4e-44 182.2 116 81.9
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.4e-44 182.2 115 80.9
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.2e-44 181.8 116 82.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 3.2e-44 181.8 111 85.6
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 4.1e-44 181.4 110 86.4
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 4.1e-44 181.4 123 81.3
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 5.4e-44 181.0 113 85.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 9.2e-44 180.3 125 79.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.1e-43 179.1 115 82.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 2.1e-43 179.1 111 84.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 2.7e-43 178.7 105 87.6
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 4.6e-43 177.9 107 86.9
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 7.8e-43 177.2 114 81.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.0e-42 176.8 109 82.6
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.3e-42 175.6 113 82.3
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 3.9e-42 174.9 113 82.3
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 6.6e-42 174.1 151 66.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.5e-41 172.9 109 84.4
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 4.3e-41 171.4 116 75.9
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.8e-40 168.7 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-38 162.5 175 58.3
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.4e-36 156.4 89 87.6
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.1e-36 154.8 119 74.8
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 5.4e-36 154.5 108 72.2
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.7e-35 152.1 197 50.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.7e-35 152.1 88 87.5
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.4e-31 139.8 85 85.9
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-31 139.0 99 74.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 4.0e-31 138.3 81 86.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 5.2e-31 137.9 72 93.1
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.8e-31 137.5 79 94.9
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 8.9e-31 137.1 88 79.5
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.5e-30 136.3 81 88.9
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-30 136.0 85 85.9
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.4e-30 134.8 86 83.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.3e-29 133.3 67 97.0
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 3.8e-29 131.7 85 81.2
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 9.3e-28 127.1 82 80.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-27 126.3 102 69.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.6e-27 126.3 102 69.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 1.9e-25 119.4 109 58.7
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 4.3e-25 118.2 97 55.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.3e-23 111.3 70 85.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.5e-22 109.8 83 73.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 3.4e-22 108.6 72 81.9
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.3e-21 106.7 80 76.2
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.3e-18 95.9 79 65.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 3.0e-18 95.5 107 59.8
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.8e-16 89.0 67 80.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.8e-16 88.2 61 73.8
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 6.2e-16 87.8 50 100.0
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.8e-07 59.7 48 70.8
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.4e-06 55.5 47 70.2
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 7.6e-06 54.3 41 75.6
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 7.6e-06 54.3 41 75.6


User provided reference genes

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