Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 5.5e-173 610.9 317 100.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.6e-140 503.1 320 84.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-138 496.5 320 83.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.6e-138 495.7 320 83.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.9e-137 491.5 320 83.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.5e-101 373.6 341 61.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.0e-94 349.4 340 59.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.6e-87 327.0 345 57.1
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 5.3e-83 312.0 374 51.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 6.4e-81 305.1 360 52.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.6e-79 300.4 348 52.9
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.6e-79 300.4 343 52.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.3e-78 296.6 357 51.8
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.9e-78 295.8 357 50.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.9e-78 295.8 357 50.4
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.9e-78 295.8 346 54.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.5e-77 293.9 340 51.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.5e-77 293.1 360 50.8
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.6e-76 290.4 359 51.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.7e-76 289.3 350 51.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.8e-76 288.9 341 52.2
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.2e-76 288.5 357 49.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.1e-76 288.1 378 49.2
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.4e-75 286.6 357 51.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.3e-75 285.4 335 52.5
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.5e-74 282.3 371 48.8
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.9e-73 278.9 340 51.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.4e-72 277.3 354 51.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.2e-72 275.8 345 49.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.5e-72 275.4 345 50.7
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.2e-71 274.2 360 48.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-71 273.9 322 47.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.6e-71 272.3 322 47.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.6e-71 272.3 370 46.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 8.7e-70 268.1 334 50.9
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.5e-69 267.3 354 47.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.5e-69 266.5 353 48.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.6e-68 263.8 340 49.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.4e-67 260.8 401 45.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.4e-67 260.0 342 48.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 4.1e-67 259.2 382 42.9
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.0e-66 256.9 367 46.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.5e-66 255.8 372 45.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 7.6e-66 255.0 335 50.1
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 5.0e-65 252.3 335 49.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.0e-65 252.3 387 41.6
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.2e-64 249.2 397 43.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.1e-63 245.4 336 46.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 3.9e-62 242.7 328 47.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 5.1e-62 242.3 362 45.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 5.1e-62 242.3 371 42.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.5e-61 240.7 327 47.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.5e-61 240.7 315 47.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 5.7e-61 238.8 356 44.4
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.3e-60 237.7 353 45.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.7e-60 236.1 334 46.4
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.2e-58 231.1 400 41.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.0e-58 230.3 349 43.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.3e-57 227.6 323 44.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.1e-55 220.3 330 44.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-55 219.9 327 41.6
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.9e-55 218.4 382 42.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 5.1e-54 215.7 304 46.1
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 9.7e-53 211.5 324 43.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-52 211.1 281 46.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.3e-52 211.1 281 46.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.3e-52 211.1 331 45.3
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 6.3e-52 208.8 332 42.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.3e-52 208.8 322 43.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.1e-51 208.0 316 42.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.1e-51 206.5 331 42.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.1e-51 206.5 321 41.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.5e-50 202.6 350 39.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.5e-50 202.6 348 40.8
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.3e-49 201.1 383 38.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.5e-48 196.8 333 40.8
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.2e-48 196.4 356 36.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.5e-48 195.7 321 40.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.1e-47 193.7 327 40.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.6e-47 193.0 329 38.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.4e-46 191.0 343 40.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.8e-46 190.7 316 40.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.9e-46 189.5 340 39.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.3e-45 186.4 319 39.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.4e-45 186.0 358 36.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.4e-45 186.0 335 40.0
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 7.4e-45 185.3 315 41.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.4e-45 185.3 361 39.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.7e-44 184.1 359 37.3
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 4.8e-44 182.6 319 41.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 6.3e-44 182.2 141 67.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.6e-42 177.6 322 40.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 7.7e-42 175.3 317 40.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.2e-41 173.7 318 37.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-40 171.4 327 37.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-40 171.0 313 40.3
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.5e-40 169.1 325 38.5
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 7.2e-40 168.7 334 37.4
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.1e-39 167.2 317 36.3
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-39 167.2 328 37.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.7e-39 166.8 327 35.5
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-38 164.9 361 35.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-38 164.1 325 38.8
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-38 163.7 325 38.8
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-38 163.7 325 38.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.7e-38 162.2 328 37.5
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 8.8e-38 161.8 314 40.1
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-37 161.4 313 39.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.2e-37 161.4 328 37.5
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-37 161.0 314 39.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.0e-37 160.6 320 38.1
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.0e-37 160.6 371 35.8
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-36 157.9 326 36.2
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.3e-36 155.6 361 33.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.3e-36 155.6 381 33.9
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-35 154.1 325 37.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.3e-35 152.5 204 48.0
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.2e-34 151.4 328 33.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.6e-34 151.0 301 36.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.0e-34 150.6 340 37.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.0e-34 150.6 301 36.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 4.5e-34 149.4 132 63.6
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 7.7e-34 148.7 320 35.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.2e-33 147.1 321 34.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-32 144.4 364 36.5
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.2e-32 143.3 118 59.3
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 4.2e-32 142.9 322 33.9
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 5.5e-32 142.5 321 35.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 5.5e-32 142.5 321 35.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.6e-31 141.0 233 42.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-30 138.3 313 33.9
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-29 134.8 155 48.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-29 134.8 155 48.4
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-29 134.4 312 35.6
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-29 134.4 312 35.6
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-29 134.4 155 48.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-29 134.4 312 35.6
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.6e-29 133.7 315 34.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.4e-29 132.9 107 67.3
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 5.7e-29 132.5 321 34.0
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 7.5e-29 132.1 448 29.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.3e-28 128.6 111 66.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.3e-28 128.6 111 66.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.7e-26 123.6 123 56.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.3e-25 120.6 113 50.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.3e-25 120.6 352 31.0
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-25 120.2 329 32.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 8.6e-25 118.6 315 34.9
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.5e-24 117.1 161 49.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.5e-24 117.1 192 39.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.6e-23 114.4 318 31.8
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.8e-23 113.6 160 41.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.8e-23 113.6 142 52.1
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 3.6e-23 113.2 173 46.2
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 6.1e-23 112.5 169 45.0
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-22 111.3 73 75.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.4e-22 111.3 164 47.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.4e-22 111.3 162 46.3
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.3e-22 110.5 162 48.8
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.5e-21 107.8 109 56.9
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.7e-21 105.9 478 26.4
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 9.8e-21 105.1 73 69.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 5.4e-19 99.4 194 35.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 7.8e-18 95.5 320 29.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.3e-16 89.7 266 33.1
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.1e-15 85.9 162 38.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.4e-14 84.7 130 40.0
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.4e-11 74.7 43 81.4
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 5.4e-11 72.8 90 46.7
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 5.9e-10 69.3 90 43.3
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 7.8e-10 68.9 90 42.2
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.0e-09 66.2 99 38.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.8e-07 60.5 90 34.4
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.1e-06 58.5 81 44.4
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.3e-06 57.4 71 36.6
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.2e-06 56.2 113 31.0
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 8.9e-06 55.5 69 39.1


User provided reference genes

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