Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-131 471.9 240 100.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 9.1e-128 460.3 240 96.2
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.9e-125 452.6 240 95.4
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.7e-121 438.3 234 94.9
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-115 419.5 228 93.4
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 7.0e-104 380.9 240 78.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 9.1e-104 380.6 273 73.3
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 7.7e-103 377.5 238 78.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.2e-102 375.9 240 77.9
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 8.5e-102 374.0 240 77.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.8e-99 364.0 195 94.9
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.5e-98 363.2 227 76.2
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.0e-98 362.8 277 69.7
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 9.8e-98 360.5 238 74.8
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.1e-96 357.1 240 70.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.1e-96 355.5 240 69.6
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.1e-96 355.5 240 69.6
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 4.5e-95 351.7 232 73.3
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.9e-95 351.3 226 77.0
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 5.9e-95 351.3 240 71.7
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-94 350.5 235 71.5
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.7e-94 349.7 240 70.4
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.7e-94 349.7 240 70.8
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.3e-94 349.4 229 73.8
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 3.8e-94 348.6 224 74.6
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 6.6e-94 347.8 240 70.0
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.6e-94 347.8 240 71.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 8.6e-94 347.4 235 71.1
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 8.6e-94 347.4 240 71.2
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.1e-93 347.1 235 71.5
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.5e-93 346.7 228 72.4
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.5e-93 346.7 240 70.8
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.5e-93 346.7 240 69.6
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.9e-93 346.3 240 71.2
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 2.5e-93 345.9 233 73.0
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 5.6e-93 344.7 224 74.6
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 5.6e-93 344.7 240 70.0
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 7.3e-93 344.4 240 70.8
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 9.5e-93 344.0 227 72.2
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.2e-92 343.6 222 73.9
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.6e-92 343.2 240 69.2
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.8e-92 342.4 239 71.5
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.8e-92 342.4 239 68.2
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 3.6e-92 342.0 227 71.8
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.0e-91 340.5 240 68.3
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.4e-91 340.1 235 70.2
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.8e-91 339.7 238 68.1
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 2.3e-91 339.3 222 73.9
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.0e-91 339.0 225 71.6
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 5.2e-91 338.2 242 68.6
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 8.9e-91 337.4 239 68.2
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-90 337.0 235 68.9
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.5e-90 336.7 235 68.5
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.5e-90 336.7 228 70.2
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.6e-90 335.9 222 73.9
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 2.6e-90 335.9 238 65.5
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.7e-90 334.7 239 72.4
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 5.7e-90 334.7 237 68.8
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.2e-89 332.8 222 71.2
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.1e-88 330.5 240 67.1
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-88 330.1 229 68.6
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.8e-88 329.7 229 69.0
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.8e-88 329.7 224 72.8
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 2.4e-88 329.3 229 68.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 3.2e-88 328.9 229 68.6
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.2e-88 328.9 229 68.6
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.2e-88 328.9 229 68.6
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 3.2e-88 328.9 229 68.6
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.2e-88 328.9 236 66.5
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.2e-88 328.9 236 66.1
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 9.2e-88 327.4 228 67.1
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 9.2e-88 327.4 228 67.1
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.5e-87 325.5 228 68.4
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.5e-87 325.5 240 67.5
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 5.9e-87 324.7 228 66.7
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 7.8e-87 324.3 226 66.8
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.3e-86 323.6 236 65.3
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.7e-86 323.2 228 69.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.3e-86 322.8 240 63.8
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 3.0e-86 322.4 233 67.0
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 6.6e-86 321.2 228 65.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 7.3e-85 317.8 223 73.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.6e-84 316.6 233 64.8
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 6.2e-84 314.7 229 67.2
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.3e-83 312.8 239 63.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.1e-83 312.4 235 62.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 4.0e-83 312.0 234 65.8
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 8.3e-81 304.3 227 64.3
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 9.2e-80 300.8 209 68.9
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.7e-79 299.3 230 63.0
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.3e-78 297.0 227 62.6
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 5.6e-77 291.6 230 65.7
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.2e-73 279.6 197 68.0
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 3.2e-72 275.8 223 59.2
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 4.6e-71 271.9 184 75.0
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 7.6e-66 254.6 176 71.0
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-61 240.4 138 87.7
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 3.3e-61 239.2 224 51.3
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 2.1e-60 236.5 151 72.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.0e-59 232.3 222 52.3
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 5.2e-59 231.9 128 92.2
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 5.1e-54 215.3 228 51.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.9e-53 213.4 228 50.0
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.0e-50 203.4 226 48.2
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 4.2e-48 195.7 151 61.6
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 5.6e-45 185.3 229 45.9
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 9.6e-45 184.5 271 38.0
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 3.1e-43 179.5 240 44.6
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 4.9e-41 172.2 225 44.4
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.2e-39 167.5 224 40.6
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.6e-39 167.2 197 49.7
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.5e-34 150.6 110 74.5
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 7.6e-34 148.3 80 90.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.3e-30 136.7 166 44.0
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 2.3e-30 136.7 268 36.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-27 125.9 69 87.0
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 5.3e-27 125.6 73 82.2
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-21 107.5 64 85.9
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 4.2e-16 89.4 50 88.0
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 4.7e-15 85.9 56 75.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.7e-13 78.2 127 37.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.0e-09 65.9 238 23.9
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 6.1e-07 58.9 47 51.1
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.8e-06 57.4 39 64.1


User provided reference genes

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