Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0250181 Rosa chinensis HOM05D014880 ORTHO05D013960 1.1e-206 723.0 350 100.0
RcHm_v2.0_Chr3g0448801 Rosa chinensis HOM05D014880 ORTHO05D013960 7.4e-171 604.0 297 97.6
RcHm_v2.0_Chr7g0197901 Rosa chinensis HOM05D014880 ORTHO05D013960 1.4e-169 599.7 297 96.3
RcHm_v2.0_Chr6g0290461 Rosa chinensis HOM05D000207 ORTHO05D002370 2.6e-147 525.8 272 91.5
RcHm_v2.0_Chr2g0160931 Rosa chinensis HOM05D014880 ORTHO05D013960 1.4e-145 520.0 274 90.9
RcHm_v2.0_Chr4g0434691 Rosa chinensis HOM05D014880 ORTHO05D013960 9.8e-139 497.3 293 83.6
RcHm_v2.0_Chr5g0058431 Rosa chinensis HOM05D014880 ORTHO05D013960 3.2e-97 359.4 272 67.6
RcHm_v2.0_Chr6g0310791 Rosa chinensis HOM05D014880 ORTHO05D013960 2.6e-91 339.7 297 62.0
RcHm_v2.0_Chr6g0300101 Rosa chinensis HOM05D014880 ORTHO05D013960 4.8e-85 318.9 170 89.4
RcHm_v2.0_Chr3g0478501 Rosa chinensis HOM05D014880 ORTHO05D013960 6.9e-52 208.8 270 47.0
RcHm_v2.0_Chr4g0401031 Rosa chinensis HOM05D037337 ORTHO05D001748 1.9e-25 120.9 294 31.3
Atru.chr1.2265 Acer truncatum HOM05D000004 ORTHO05D000002 3.6e-16 90.1 98 45.9
Sabra16G0280100 Salix brachista HOM05D000004 ORTHO05D000002 6.1e-16 89.4 92 46.7
Rhsim02G0214500 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.0e-15 87.0 76 51.3
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 3.0e-15 87.0 76 51.3
Rhsim10G0140700 Rhododendron simsii HOM05D002417 ORTHO05D002589 5.2e-15 86.3 165 32.1
RcHm_v2.0_Chr7g0228641 Rosa chinensis HOM05D037337 ORTHO05D013960 5.2e-15 86.3 123 40.7
Sabra03G0152600 Salix brachista HOM05D000004 ORTHO05D000002 8.9e-15 85.5 80 47.5
Rhsim05G0064200 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.6e-14 84.0 144 33.3
Rhsim11G0041000 Rhododendron simsii HOM05D008628 ORTHO05D010443 2.6e-14 84.0 81 46.9
Sabra01G0044700 Salix brachista HOM05D000004 ORTHO05D000002 9.8e-14 82.0 92 43.5
Sabra03G0051800 Salix brachista HOM05D000004 ORTHO05D000002 9.8e-14 82.0 82 46.3
Dinv07775 Davidia involucrata HOM05D000004 ORTHO05D000002 1.3e-13 81.6 124 37.9
Dinv38966 Davidia involucrata HOM05D000151 ORTHO05D000074 1.3e-13 81.6 124 37.9
RcHm_v2.0_Chr3g0452401 Rosa chinensis HOM05D000004 ORTHO05D000002 1.3e-13 81.6 76 48.7
RcHm_v2.0_Chr3g0461881 Rosa chinensis HOM05D000004 ORTHO05D000002 4.9e-13 79.7 72 50.0
FvH4_4g12742 Fragaria vesca HOM05D000004 ORTHO05D000002 6.3e-13 79.3 115 41.7
FvH4_4g14287 Fragaria vesca HOM05D000004 ORTHO05D000002 1.6e-11 74.7 90 42.2
FvH4_3g40201 Fragaria vesca HOM05D000004 ORTHO05D000002 2.0e-11 74.3 79 40.5
EL10Ac1g00890 Beta vulgaris HOM05D008382 ORTHO05D000002 3.5e-11 73.6 65 49.2
EL10Ac2g03748 Beta vulgaris HOM05D000004 ORTHO05D000002 4.5e-11 73.2 76 43.4
FvH4_3g27861 Fragaria vesca HOM05D000004 ORTHO05D000002 7.8e-11 72.4 112 37.5
TWI23G0744 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.0e-10 72.0 78 43.6
TPR.G40748 Trifolium pratense HOM05D000004 ORTHO05D000002 1.3e-10 71.6 116 36.2
Manes.08G027950 Manihot esculenta HOM05D000004 ORTHO05D000002 3.9e-10 70.1 76 42.1
Manes.12G123101 Manihot esculenta HOM05D000004 ORTHO05D000002 5.0e-10 69.7 76 42.1
TWI59G0882 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 5.0e-10 69.7 83 41.0
TPR.G29747 Trifolium pratense HOM05D000004 ORTHO05D000002 6.6e-10 69.3 115 36.5
TPR.G39423 Trifolium pratense HOM05D000004 ORTHO05D000002 6.6e-10 69.3 110 40.0
FvH4_6g20603 Fragaria vesca HOM05D000004 ORTHO05D000002 8.6e-10 68.9 76 43.4
EL10Ac3g06995 Beta vulgaris HOM05D000004 ORTHO05D000002 1.9e-09 67.8 130 33.1
Sabra04G0097800 Salix brachista HOM05D000004 ORTHO05D000002 2.5e-09 67.4 88 36.4
FvH4_2g17922 Fragaria vesca HOM05D000004 ORTHO05D000002 3.3e-09 67.0 63 46.0
Rhsim02G0114600 Rhododendron simsii HOM05D000682 ORTHO05D000510 4.3e-09 66.6 69 44.9
TWI39G0051 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 5.6e-09 66.2 79 40.5
Atru.chr6.119 Acer truncatum HOM05D000004 ORTHO05D000002 7.3e-09 65.9 93 37.6
FvH4_4g33448 Fragaria vesca HOM05D000004 ORTHO05D000002 9.5e-09 65.5 62 45.2
Manes.16G058925 Manihot esculenta HOM05D000004 ORTHO05D000002 1.6e-08 64.7 76 40.8
Sabra10G0055600 Salix brachista HOM05D000004 ORTHO05D000002 2.1e-08 64.3 78 41.0
TPR.G116 Trifolium pratense HOM05D000004 ORTHO05D000002 2.1e-08 64.3 111 38.7
TAR135G0002 Trochodendron aralioides HOM05D000004 ORTHO05D000002 2.8e-08 63.9 99 34.3
TAR344G0004 Trochodendron aralioides HOM05D000004 ORTHO05D000002 3.6e-08 63.5 99 34.3
Actinidia28597 Actinidia chinensis HOM05D052923 ORTHO05D000002 6.1e-08 62.8 122 30.3
Aa31LG9G4450 Aethionema arabicum HOM05D031320 ORTHO05D013960 8.0e-08 62.4 75 40.0
Sabra11G0133300 Salix brachista HOM05D000004 ORTHO05D000002 8.0e-08 62.4 111 34.2
Rhsim03G0207400 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.8e-07 61.2 142 31.7
Sabra17G0030900 Salix brachista HOM05D001103 ORTHO05D000002 1.8e-07 61.2 76 35.5
Manes.05G083466 Manihot esculenta HOM05D000004 ORTHO05D000002 4.0e-07 60.1 55 45.5
Sabra15G0070300 Salix brachista HOM05D000004 ORTHO05D000002 4.0e-07 60.1 76 36.8
SHI54675 Sapria himalayana HOM05D000004 ORTHO05D000002 4.0e-07 60.1 92 34.8
Hund09531 Selenicereus undatus HOM05D011119 ORTHO05D012524 4.0e-07 60.1 80 36.2
TPR.G4156 Trifolium pratense HOM05D000007 ORTHO05D000521 4.0e-07 60.1 53 47.2
Rhsim02G0002900 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.2e-07 59.7 69 40.6
TPR.G17981 Trifolium pratense HOM05D000004 ORTHO05D000002 6.8e-07 59.3 48 47.9
SHI00352 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI03109 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI47463 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI50759 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI50854 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI51873 Sapria himalayana HOM05D000004 ORTHO05D000002 8.9e-07 58.9 147 27.9
SHI50378 Sapria himalayana HOM05D000004 ORTHO05D000002 1.2e-06 58.5 147 27.9
SHI50872 Sapria himalayana HOM05D000004 ORTHO05D000002 1.2e-06 58.5 147 27.2
SHI54723 Sapria himalayana HOM05D000004 ORTHO05D000002 1.2e-06 58.5 147 27.2
SHI55000 Sapria himalayana HOM05D000004 ORTHO05D000002 1.2e-06 58.5 147 27.9
TWI09G0867 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.5e-06 58.2 89 38.2
Aa31LG6G10190 Aethionema arabicum HOM05D031320 ORTHO05D013960 2.0e-06 57.8 60 45.0
EL10Ac2g03002 Beta vulgaris HOM05D000004 ORTHO05D000002 2.0e-06 57.8 48 47.9
ECA248G1279 Erigeron canadensis HOM05D002530 ORTHO05D002802 2.0e-06 57.8 105 33.3
SHI54655 Sapria himalayana HOM05D000004 ORTHO05D000002 3.4e-06 57.0 92 33.7
SHI55032 Sapria himalayana HOM05D000004 ORTHO05D000002 3.4e-06 57.0 92 33.7
CARHR218860 Cardamine hirsuta HOM05D031320 ORTHO05D013960 4.4e-06 56.6 74 35.1
Hma1.2p1_0078F.1_g040040 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 5.8e-06 56.2 130 28.5
PGR031G2743 Punica granatum HOM05D000004 ORTHO05D000002 5.8e-06 56.2 133 33.8
PGR083G2793 Punica granatum HOM05D000004 ORTHO05D000002 5.8e-06 56.2 91 38.5
PGR102G0017 Punica granatum HOM05D000004 ORTHO05D000002 5.8e-06 56.2 133 33.8
PGR102G0022 Punica granatum HOM05D000004 ORTHO05D000002 5.8e-06 56.2 91 38.5
TAR694G0001 Trochodendron aralioides HOM05D000374 ORTHO05D000238 5.8e-06 56.2 62 41.9
AT4G13320 Arabidopsis thaliana HOM05D031320 ORTHO05D013960 7.5e-06 55.8 69 37.7
PGR004G0370 Punica granatum HOM05D000004 ORTHO05D000002 7.5e-06 55.8 53 47.2
CSS0030845 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.8e-06 55.5 78 37.2
PGR119G0732 Punica granatum HOM05D000004 ORTHO05D000002 9.8e-06 55.5 82 37.8
Rhsim05G0231100 Rhododendron simsii HOM05D010054 ORTHO05D000001 9.8e-06 55.5 59 44.1


User provided reference genes

Program Settings