Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0250011 Rosa chinensis HOM05D000005 ORTHO05D001748 2.6e-47 192.6 180 100.0
RcHm_v2.0_Chr6g0250201 Rosa chinensis HOM05D000005 ORTHO05D000012 7.5e-34 147.9 179 86.6
RcHm_v2.0_Chr6g0250241 Rosa chinensis HOM05D000005 ORTHO05D000012 6.3e-33 144.8 150 88.0
RcHm_v2.0_Chr6g0250131 Rosa chinensis HOM05D000005 ORTHO05D001748 2.8e-28 129.4 179 78.2
RcHm_v2.0_Chr6g0245331 Rosa chinensis HOM05D000005 ORTHO05D001748 3.0e-27 125.9 179 73.2
RcHm_v2.0_Chr6g0249881 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-26 123.6 150 80.7
RcHm_v2.0_Chr6g0246861 Rosa chinensis HOM05D000005 ORTHO05D000012 8.3e-25 117.9 150 76.7
RcHm_v2.0_Chr6g0249841 Rosa chinensis HOM05D000005 ORTHO05D000012 8.3e-25 117.9 150 74.7
FAN24G1378 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-24 117.5 179 73.2
RcHm_v2.0_Chr6g0250301 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-24 116.7 150 58.7
RcHm_v2.0_Chr6g0249721 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-22 109.8 150 73.3
RcHm_v2.0_Chr6g0249921 Rosa chinensis HOM05D000005 ORTHO05D001748 3.8e-22 109.0 149 74.5
RcHm_v2.0_Chr6g0246601 Rosa chinensis HOM05D000005 ORTHO05D001748 6.6e-22 108.2 135 73.3
RcHm_v2.0_Chr6g0246751 Rosa chinensis HOM05D000005 ORTHO05D001748 8.6e-22 107.8 171 70.8
RcHm_v2.0_Chr6g0249951 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-21 107.5 150 75.3
RcHm_v2.0_Chr7g0217981 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-21 104.8 180 59.4
FAN20G2506 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.8e-20 102.8 150 66.0
RcHm_v2.0_Chr6g0246891 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-19 100.5 134 82.1
RcHm_v2.0_Chr6g0245321 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-19 99.8 142 75.4
RcHm_v2.0_Chr6g0245551 Rosa chinensis HOM05D000005 ORTHO05D001748 2.6e-18 96.3 135 78.5
FAN27G2806 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-18 95.1 60 71.7
RcHm_v2.0_Chr6g0284641 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-16 90.9 60 65.0
RcHm_v2.0_Chr6g0284581 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-16 90.1 60 66.7
RcHm_v2.0_Chr6g0245341 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-15 87.0 60 66.7
RcHm_v2.0_Chr6g0245501 Rosa chinensis HOM05D000005 ORTHO05D001748 1.6e-15 87.0 60 65.0
Prupe.8G005300 Prunus persica HOM05D000005 ORTHO05D000012 3.0e-14 82.8 60 63.3
Prupe.7G037600 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-13 80.9 60 63.3
Prupe.7G026100 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-13 80.5 60 63.3
RcHm_v2.0_Chr6g0251441 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-13 80.5 135 71.9
Prupe.7G037000 Prunus persica HOM05D000005 ORTHO05D000012 4.3e-13 79.0 60 61.7
RcHm_v2.0_Chr6g0246391 Rosa chinensis HOM05D000005 ORTHO05D000012 9.5e-13 77.8 60 60.0
RcHm_v2.0_Chr6g0246541 Rosa chinensis HOM05D000005 ORTHO05D001748 1.2e-12 77.4 112 84.8
RcHm_v2.0_Chr6g0251321 Rosa chinensis HOM05D000005 ORTHO05D001748 8.0e-12 74.7 141 63.8
RcHm_v2.0_Chr6g0246881 Rosa chinensis HOM05D000005 ORTHO05D001748 1.1e-11 74.3 134 55.2
FAN26G0846 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-11 73.9 179 30.7
RcHm_v2.0_Chr6g0245481 Rosa chinensis HOM05D000005 ORTHO05D001748 1.8e-11 73.6 45 73.3
RcHm_v2.0_Chr6g0250161 Rosa chinensis HOM05D000005 ORTHO05D001748 4.0e-11 72.4 112 81.2
RcHm_v2.0_Chr6g0246501 Rosa chinensis HOM05D000005 ORTHO05D001748 8.9e-11 71.2 45 73.3
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.8e-10 68.6 60 55.0
Prupe.1G523900 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-09 67.4 60 56.7
QL10p023221 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-09 66.2 179 48.0
QL93p1902_0177 Quercus lobata HOM05D000005 ORTHO05D002559 4.9e-09 65.5 177 28.2
Ciclev10018572m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.4e-09 65.1 149 30.2
Atru.chr11.2450 Acer truncatum HOM05D000005 ORTHO05D000008 1.1e-08 64.3 60 50.0
Ciclev10023938m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.1e-08 64.3 149 30.2
FvH4_1g22540 Fragaria vesca HOM05D000005 ORTHO05D000012 1.1e-08 64.3 60 51.7
FAN23G1655 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-08 64.3 60 51.7
QL09p005364 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-08 64.3 179 51.4
TPR.G18327 Trifolium pratense HOM05D000005 ORTHO05D000012 1.4e-08 63.9 150 39.3
Ciclev10024485m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.1e-08 62.4 149 29.5
QL08p044305 Quercus lobata HOM05D000005 ORTHO05D000012 5.4e-08 62.0 60 53.3
QL08p044346 Quercus lobata HOM05D000005 ORTHO05D000012 5.4e-08 62.0 60 48.3
Ciclev10024507m.g Citrus clementina HOM05D000005 ORTHO05D000012 7.0e-08 61.6 58 50.0
QL08p044375 Quercus lobata HOM05D000005 ORTHO05D000012 7.0e-08 61.6 60 51.7
RcHm_v2.0_Chr6g0249181 Rosa chinensis HOM05D000005 ORTHO05D001748 7.0e-08 61.6 112 75.0
FvH4_1g07020 Fragaria vesca HOM05D000005 ORTHO05D000012 9.2e-08 61.2 60 55.0
ClCG08G001180 Citrullus lanatus HOM05D000005 ORTHO05D000012 1.2e-07 60.8 60 45.0
FvH4_1g22372 Fragaria vesca HOM05D000005 ORTHO05D000012 1.2e-07 60.8 60 55.0
FvH4_1g22512 Fragaria vesca HOM05D000005 ORTHO05D000012 1.2e-07 60.8 60 55.0
FAN19G1916 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-07 60.8 60 55.0
FAN23G2629 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-07 60.8 60 55.0
Ciclev10019116m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.6e-07 60.5 58 50.0
FvH4_7g32710 Fragaria vesca HOM05D000005 ORTHO05D000012 1.6e-07 60.5 60 46.7
FvH4_7g33140 Fragaria vesca HOM05D000005 ORTHO05D000012 1.6e-07 60.5 60 48.3
Gohir.A11G298300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.6e-07 60.5 60 45.0
Gohir.A11G298350 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.6e-07 60.5 57 47.4
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.6e-07 60.5 179 33.0
QL93p2004_0077 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-07 60.5 58 51.7
FAN19G1590 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.0e-07 60.1 60 55.0
Phvul.010G101200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.0e-07 60.1 177 32.2
FvH4_7g32740 Fragaria vesca HOM05D000005 ORTHO05D000012 2.7e-07 59.7 60 48.3
Gohir.D11G313100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.7e-07 59.7 58 46.6
Prupe.1G524000 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-07 59.7 60 51.7
Ciclev10024511m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.5e-07 59.3 186 33.9
Ciclev10024735m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.5e-07 59.3 56 53.6
FvH4_7g32440 Fragaria vesca HOM05D000005 ORTHO05D000012 3.5e-07 59.3 60 50.0
FAN03G0577 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-07 59.3 60 50.0
FAN03G1174 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-07 59.3 60 50.0
ClCG08G001260 Citrullus lanatus HOM05D000005 ORTHO05D000012 4.6e-07 58.9 60 48.3
Ciclev10023505m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.6e-07 58.9 56 51.8
QL09p005202 Quercus lobata HOM05D000005 ORTHO05D000012 4.6e-07 58.9 60 48.3
RcHm_v2.0_Chr1g0365641 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-07 58.9 60 45.0
Ciclev10023905m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.0e-07 58.5 60 50.0
FvH4_7g32760 Fragaria vesca HOM05D000005 ORTHO05D000012 6.0e-07 58.5 60 48.3
FAN01G1242 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.0e-07 58.5 60 48.3
Lj3g0003545 Lotus japonicus HOM05D000005 ORTHO05D000012 6.0e-07 58.5 150 30.0
Potri.013G097832 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.0e-07 58.5 60 50.0
RcHm_v2.0_Chr1g0382041 Rosa chinensis HOM05D000005 ORTHO05D000012 6.0e-07 58.5 60 46.7
RcHm_v2.0_Chr6g0246921 Rosa chinensis HOM05D000005 ORTHO05D001748 6.0e-07 58.5 32 84.4
FAN10G2256 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.8e-07 58.2 60 48.3
QL03p009494 Quercus lobata HOM05D000005 ORTHO05D000012 7.8e-07 58.2 174 56.3
Sed0001955 Sechium edule HOM05D000005 ORTHO05D000012 7.8e-07 58.2 60 46.7
GSVIVG01012761001 Vitis vinifera HOM05D000005 ORTHO05D001748 7.8e-07 58.2 60 46.7
FAN03G2994 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-06 57.8 60 46.7
FvH4_7g32470 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-06 57.4 56 50.0
FAN10G2626 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-06 57.4 57 49.1
Gohir.D11G296916 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-06 57.4 162 50.0
QL03p061083 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-06 57.4 57 47.4
QL05p023697 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-06 57.4 60 48.3
RcHm_v2.0_Chr6g0250371 Rosa chinensis HOM05D000005 ORTHO05D001748 1.3e-06 57.4 112 73.2
Cc00_g25590 Coffea canephora HOM05D000005 ORTHO05D000012 1.7e-06 57.0 168 41.7
FvH4_7g32460 Fragaria vesca HOM05D000005 ORTHO05D000012 1.7e-06 57.0 60 48.3
FAN01G2051 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-06 57.0 57 49.1
QL10p054796 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-06 57.0 60 48.3
RcHm_v2.0_Chr1g0340831 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 60 45.0
RcHm_v2.0_Chr1g0365561 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 60 45.0
RcHm_v2.0_Chr1g0382271 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.0 60 48.3
RcHm_v2.0_Chr6g0249741 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-06 57.0 61 72.1
Manes.01G120200 Manihot esculenta HOM05D000005 ORTHO05D000012 2.3e-06 56.6 60 45.0
QL05p078777 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-06 56.6 150 30.0
RcHm_v2.0_Chr1g0382221 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-06 56.6 60 46.7
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-06 56.6 176 54.0
Medtr7g078780 Medicago truncatula HOM05D000005 ORTHO05D000012 3.0e-06 56.2 179 41.3
QL03p060916 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-06 56.2 57 47.4
QL08p044289 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-06 56.2 60 50.0
RcHm_v2.0_Chr1g0365531 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-06 56.2 60 45.0
Ca_23602_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 3.9e-06 55.8 177 52.5
Ciclev10023653m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.9e-06 55.8 58 50.0
Ciclev10024379m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.9e-06 55.8 58 50.0
Atru.chr11.83 Acer truncatum HOM05D000005 ORTHO05D000012 5.0e-06 55.5 60 45.0
Ciclev10000206m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.0e-06 55.5 60 46.7
FAN27G0341 Fragaria x ananassa HOM05D000005 ORTHO05D001748 5.0e-06 55.5 61 49.2
Gohir.D11G312500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.0e-06 55.5 58 44.8
MD15G1377300 Malus domestica HOM05D000005 ORTHO05D000012 5.0e-06 55.5 57 50.9
Medtr7g078180 Medicago truncatula HOM05D000005 ORTHO05D000012 5.0e-06 55.5 150 27.3
FAN04G1890 Fragaria x ananassa HOM05D000005 ORTHO05D012870 6.6e-06 55.1 176 34.1
Gohir.A11G283600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.6e-06 55.1 162 26.5
Potri.013G097000 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.6e-06 55.1 58 51.7
Potri.013G098000 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.6e-06 55.1 58 51.7
Potri.017G104901 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.6e-06 55.1 60 46.7
Prupe.1G526300 Prunus persica HOM05D000005 ORTHO05D000012 6.6e-06 55.1 55 47.3
Prupe.8G005100 Prunus persica HOM05D000005 ORTHO05D000012 6.6e-06 55.1 175 47.4
QL08p044397 Quercus lobata HOM05D000005 ORTHO05D000012 6.6e-06 55.1 60 45.0
RcHm_v2.0_Chr5g0055581 Rosa chinensis HOM05D000005 ORTHO05D000012 6.6e-06 55.1 60 43.3
arahy.Tifrunner.gnm1.ann1.A8JJ1G Arachis hypogaea HOM05D000005 ORTHO05D000068 8.6e-06 54.7 60 41.7
arahy.Tifrunner.gnm1.ann1.BW2M8B Arachis hypogaea HOM05D000005 ORTHO05D009032 8.6e-06 54.7 60 41.7
Cc00_g23040 Coffea canephora HOM05D000005 ORTHO05D000012 8.6e-06 54.7 168 61.9
FAN01G1416 Fragaria x ananassa HOM05D000005 ORTHO05D004283 8.6e-06 54.7 60 45.0
FAN10G1985 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.6e-06 54.7 57 47.4
Gohir.A11G287280 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.6e-06 54.7 134 55.2
Gohir.A11G297700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.6e-06 54.7 58 44.8
Gohir.D11G312618 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.6e-06 54.7 58 44.8
Lj2g0001387 Lotus japonicus HOM05D000005 ORTHO05D000012 8.6e-06 54.7 60 41.7
MD05G1022400 Malus domestica HOM05D000005 ORTHO05D000012 8.6e-06 54.7 58 46.6
Prupe.8G056700 Prunus persica HOM05D000005 ORTHO05D000012 8.6e-06 54.7 58 44.8
QL03p061004 Quercus lobata HOM05D000005 ORTHO05D000012 8.6e-06 54.7 57 47.4
QL04p053542 Quercus lobata HOM05D000005 ORTHO05D000012 8.6e-06 54.7 174 51.1
QL04p083750 Quercus lobata HOM05D000005 ORTHO05D000012 8.6e-06 54.7 59 45.8
QL04p092065 Quercus lobata HOM05D000005 ORTHO05D000007 8.6e-06 54.7 60 46.7


User provided reference genes

Program Settings