Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249731 Rosa chinensis HOM05D000005 ORTHO05D001748 2.1e-86 322.4 169 100.0
RcHm_v2.0_Chr6g0250201 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-46 190.3 174 64.9
RcHm_v2.0_Chr6g0250241 Rosa chinensis HOM05D000005 ORTHO05D000012 5.2e-45 184.9 197 54.8
RcHm_v2.0_Chr6g0251441 Rosa chinensis HOM05D000005 ORTHO05D001748 6.8e-45 184.5 177 54.8
RcHm_v2.0_Chr6g0250131 Rosa chinensis HOM05D000005 ORTHO05D001748 8.3e-43 177.6 173 63.6
RcHm_v2.0_Chr7g0217981 Rosa chinensis HOM05D000005 ORTHO05D000012 2.4e-42 176.0 167 56.3
RcHm_v2.0_Chr6g0251301 Rosa chinensis HOM05D000005 ORTHO05D001748 2.7e-41 172.6 168 56.5
RcHm_v2.0_Chr6g0249921 Rosa chinensis HOM05D000005 ORTHO05D001748 2.1e-38 162.9 175 54.9
RcHm_v2.0_Chr6g0284641 Rosa chinensis HOM05D000005 ORTHO05D000012 1.0e-37 160.6 185 49.2
RcHm_v2.0_Chr6g0249721 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-37 160.2 179 58.7
RcHm_v2.0_Chr6g0249841 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-37 159.1 179 59.2
RcHm_v2.0_Chr6g0250081 Rosa chinensis HOM05D000005 ORTHO05D001748 2.0e-36 156.4 169 59.8
RcHm_v2.0_Chr6g0284581 Rosa chinensis HOM05D000005 ORTHO05D000012 4.4e-36 155.2 182 53.3
RcHm_v2.0_Chr6g0245341 Rosa chinensis HOM05D000005 ORTHO05D000012 9.8e-36 154.1 140 60.7
RcHm_v2.0_Chr6g0249221 Rosa chinensis HOM05D000005 ORTHO05D001748 9.8e-36 154.1 170 50.6
RcHm_v2.0_Chr6g0245331 Rosa chinensis HOM05D000005 ORTHO05D001748 4.1e-34 148.7 168 51.8
RcHm_v2.0_Chr6g0251341 Rosa chinensis HOM05D000005 ORTHO05D001748 4.1e-34 148.7 167 50.3
RcHm_v2.0_Chr6g0249691 Rosa chinensis HOM05D000005 ORTHO05D001748 4.5e-33 145.2 121 56.2
RcHm_v2.0_Chr6g0246501 Rosa chinensis HOM05D000005 ORTHO05D001748 2.9e-32 142.5 136 55.9
RcHm_v2.0_Chr6g0246671 Rosa chinensis HOM05D000005 ORTHO05D001748 6.1e-30 134.8 182 50.0
RcHm_v2.0_Chr6g0251471 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-29 132.9 130 53.8
RcHm_v2.0_Chr6g0246721 Rosa chinensis HOM05D000005 ORTHO05D001748 3.4e-28 129.0 183 45.4
RcHm_v2.0_Chr6g0245551 Rosa chinensis HOM05D000005 ORTHO05D001748 1.2e-25 120.6 140 50.7
RcHm_v2.0_Chr6g0246861 Rosa chinensis HOM05D000005 ORTHO05D000012 6.0e-25 118.2 117 51.3
FAN24G1378 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-24 114.8 174 43.7
FAN20G2506 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-21 107.5 179 43.0
RcHm_v2.0_Chr6g0250291 Rosa chinensis HOM05D000005 ORTHO05D001748 1.1e-21 107.5 121 52.9
RcHm_v2.0_Chr6g0246391 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-21 106.7 179 44.1
RcHm_v2.0_Chr6g0251321 Rosa chinensis HOM05D000005 ORTHO05D001748 3.1e-21 105.9 146 45.2
FAN27G0643 Fragaria x ananassa HOM05D000005 ORTHO05D001748 1.0e-16 90.9 82 57.3
RcHm_v2.0_Chr6g0245501 Rosa chinensis HOM05D000005 ORTHO05D001748 7.5e-12 74.7 57 56.1
RcHm_v2.0_Chr6g0250161 Rosa chinensis HOM05D000005 ORTHO05D001748 1.3e-11 73.9 57 61.4
RcHm_v2.0_Chr6g0250371 Rosa chinensis HOM05D000005 ORTHO05D001748 1.3e-11 73.9 60 58.3
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 3.5e-09 65.9 122 37.7
Prupe.1G524000 Prunus persica HOM05D000005 ORTHO05D000012 4.6e-09 65.5 132 37.1
Prupe.2G059000 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-08 64.3 122 36.9
RcHm_v2.0_Chr6g0250771 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-08 63.9 122 37.7
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-08 63.5 122 35.2
Prupe.8G046700 Prunus persica HOM05D000005 ORTHO05D000012 3.0e-08 62.8 125 35.2
RcHm_v2.0_Chr5g0063811 Rosa chinensis HOM05D000005 ORTHO05D000012 3.9e-08 62.4 132 30.3
FvH4_7g12160 Fragaria vesca HOM05D000005 ORTHO05D000012 6.6e-08 61.6 134 30.6
FAN06G1767 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-08 61.6 134 30.6
FAN06G2994 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-08 61.6 134 30.6
FAN01G0224 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-07 60.8 131 31.3
FAN10G1656 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.3e-07 59.3 134 29.9
FAN03G2131 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.6e-07 58.5 134 29.9
FAN21G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.3e-07 58.2 133 30.1
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-07 58.2 72 44.4
MD10G1007300 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-06 57.0 142 31.7
RcHm_v2.0_Chr6g0249881 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-06 56.6 40 60.0
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-06 56.2 72 43.1
FvH4_2g00950 Fragaria vesca HOM05D000005 ORTHO05D001748 4.7e-06 55.5 74 44.6
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 4.7e-06 55.5 72 43.1
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 4.7e-06 55.5 72 44.4
FAN23G1655 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.2e-06 55.1 156 28.8
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 8.1e-06 54.7 72 41.7


User provided reference genes

Program Settings