Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 9.6e-181 636.7 325 100.0
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 1.7e-161 572.8 328 89.6
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.5e-137 491.1 274 89.8
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 5.0e-129 464.9 331 71.9
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 1.4e-126 456.8 328 70.7
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 2.3e-126 456.1 329 71.4
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 4.0e-126 455.3 327 70.0
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 1.3e-124 450.3 309 72.2
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.7e-124 449.9 336 68.2
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 4.8e-124 448.4 327 69.7
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 1.1e-123 447.2 339 67.6
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 5.3e-123 444.9 325 69.5
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 1.6e-122 443.4 322 69.3
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 7.7e-122 441.0 334 68.9
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.0e-121 440.7 327 69.1
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 5.0e-121 438.3 347 66.9
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.5e-120 436.8 283 76.0
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 4.2e-120 435.3 306 70.6
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 9.4e-120 434.1 317 67.5
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 2.1e-119 433.0 316 69.3
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 4.7e-119 431.8 324 66.7
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.8e-118 427.9 319 67.1
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.2e-117 427.2 337 65.3
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.0e-117 426.4 331 65.9
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.3e-116 423.7 318 65.1
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 6.3e-116 421.4 323 64.1
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.4e-115 420.2 322 67.1
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.8e-115 419.9 307 67.8
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.4e-115 419.5 313 66.1
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 3.1e-115 419.1 301 68.1
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.7e-114 416.0 302 68.2
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 3.8e-113 412.1 323 62.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.1e-112 410.6 306 66.7
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.9e-112 409.8 314 65.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 2.5e-112 409.5 314 65.3
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 9.4e-112 407.5 320 63.8
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 6.1e-111 404.8 324 63.0
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 3.0e-110 402.5 319 63.3
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 8.8e-110 401.0 301 64.8
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 3.1e-107 392.5 287 65.2
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 4.1e-107 392.1 310 63.9
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.0e-107 391.3 309 62.8
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 7.0e-107 391.3 306 64.7
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 4.5e-106 388.7 299 64.2
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 5.9e-106 388.3 288 68.8
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.3e-105 387.1 290 65.5
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 2.9e-105 386.0 299 63.9
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 1.9e-104 383.3 308 62.7
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 1.9e-104 383.3 308 62.0
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.5e-104 382.9 313 62.3
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.3e-104 382.5 298 63.4
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 5.6e-104 381.7 309 62.1
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 9.5e-104 380.9 324 59.3
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.6e-103 380.2 266 69.5
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.8e-102 376.7 293 63.1
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 2.3e-102 376.3 298 62.1
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 6.8e-102 374.8 322 61.5
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 4.4e-101 372.1 304 60.5
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 5.7e-101 371.7 309 60.2
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.7e-100 370.2 309 60.2
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.2e-100 369.8 308 59.7
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 8.3e-100 367.9 300 60.7
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.4e-99 366.3 278 73.4
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.7e-98 362.8 278 68.0
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.5e-98 362.5 269 66.5
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 4.6e-98 362.1 355 53.8
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.3e-97 359.8 330 57.0
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 2.5e-96 356.3 302 59.9
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 6.2e-95 351.7 302 59.3
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 1.0e-94 350.9 309 57.9
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 1.0e-94 350.9 315 59.4
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.2e-93 347.4 294 61.6
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.4e-93 345.5 310 56.1
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 7.5e-93 344.7 323 56.7
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.5e-90 335.9 293 59.7
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 6.0e-90 335.1 303 55.4
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 2.1e-87 326.6 214 76.2
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 6.2e-87 325.1 340 52.1
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 9.8e-85 317.8 301 56.1
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 2.2e-84 316.6 213 72.3
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 2.6e-77 293.1 211 67.3
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 3.4e-77 292.7 270 58.1
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 1.7e-76 290.4 354 50.6
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.2e-74 284.3 212 66.0
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 5.1e-73 278.9 321 43.9
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 5.1e-73 278.9 215 63.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.1e-72 277.7 205 64.9
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 2.8e-63 246.5 242 55.0
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.8e-57 227.3 197 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 3.6e-55 219.5 291 41.6
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 3.6e-55 219.5 304 44.1
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.0e-53 213.8 284 44.4
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.4e-51 206.8 122 90.2
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 1.0e-49 201.4 124 75.0
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.3e-49 201.1 289 41.2
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 3.3e-48 196.4 211 47.4
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.2e-42 177.9 179 58.1
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 2.6e-37 160.2 115 67.0
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 7.6e-37 158.7 143 58.0
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 7.6e-37 158.7 126 58.7
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 9.3e-35 151.8 97 75.3
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 1.6e-34 151.0 292 31.5
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.3e-31 141.4 92 75.0
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.8e-30 137.5 96 67.7
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.9e-28 130.2 82 74.4
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.0e-25 121.7 88 63.6
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.8e-25 120.9 162 38.9
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.0e-25 120.2 88 62.5
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.8e-25 118.6 153 48.4
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.8e-25 118.6 153 48.4
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.4e-24 116.3 153 47.7
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 2.8e-23 113.6 80 60.0
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 2.4e-22 110.5 280 30.4
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 3.8e-20 103.2 87 64.4
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 7.9e-18 95.5 86 59.3
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 3.9e-17 93.2 135 44.4
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 3.2e-11 73.6 45 80.0
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.8e-09 67.8 44 68.2


User provided reference genes

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