Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 5.1e-46 188.0 141 100.0
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 4.5e-42 174.9 139 86.3
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 4.5e-42 174.9 139 86.3
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 2.8e-36 155.6 142 74.6
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 1.1e-29 133.7 140 74.3
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 2.0e-26 122.9 138 71.0
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 1.6e-23 113.2 138 70.3
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 4.6e-23 111.7 139 70.5
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 7.9e-23 110.9 136 62.5
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 1.4e-22 110.2 136 68.4
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.4e-22 110.2 138 68.1
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 2.3e-22 109.4 139 71.2
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 2.3e-22 109.4 136 59.6
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 3.0e-22 109.0 135 59.3
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 3.0e-22 109.0 134 76.1
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 1.1e-21 107.1 139 67.6
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.5e-21 106.7 136 60.3
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 2.0e-21 106.3 141 70.2
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 2.6e-21 105.9 141 61.0
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 4.4e-21 105.1 141 70.2
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 5.7e-21 104.8 138 63.8
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 9.7e-21 104.0 138 55.8
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 1.7e-20 103.2 141 67.4
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 2.8e-20 102.4 137 68.6
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 4.8e-20 101.7 137 67.9
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 6.3e-20 101.3 138 58.7
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 6.3e-20 101.3 139 66.9
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 8.2e-20 100.9 138 59.4
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 8.2e-20 100.9 140 57.1
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 8.2e-20 100.9 137 57.7
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 1.4e-19 100.1 138 68.8
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 1.4e-19 100.1 137 62.8
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 1.8e-19 99.8 137 67.2
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 1.8e-19 99.8 137 67.2
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 1.8e-19 99.8 134 72.4
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 1.8e-19 99.8 137 69.3
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 1.8e-19 99.8 137 69.3
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 1.8e-19 99.8 134 60.4
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 2.4e-19 99.4 136 66.9
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 2.4e-19 99.4 137 59.9
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 4.1e-19 98.6 134 63.4
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 9.1e-19 97.4 137 64.2
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 9.1e-19 97.4 137 62.8
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 1.2e-18 97.1 136 61.0
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 1.2e-18 97.1 136 57.4
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 1.2e-18 97.1 132 68.9
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 3.4e-18 95.5 134 71.6
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 5.9e-18 94.7 136 65.4
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 1.3e-17 93.6 134 61.2
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 2.2e-17 92.8 136 55.1
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 5.0e-17 91.7 138 53.6
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 5.0e-17 91.7 138 60.9
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 5.0e-17 91.7 134 61.2
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 8.5e-17 90.9 139 66.9
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.2e-16 89.0 138 60.1
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 5.5e-16 88.2 133 62.4
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 5.5e-16 88.2 136 61.0
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 9.4e-16 87.4 136 54.4
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 2.7e-15 85.9 134 68.7
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 3.6e-15 85.5 141 63.1
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 7.9e-15 84.3 137 65.0
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 1.4e-14 83.6 137 59.9
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 1.4e-14 83.6 133 66.2
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 3.0e-14 82.4 136 58.1
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 3.9e-14 82.0 137 53.3
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 3.9e-14 82.0 142 50.0
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 5.2e-14 81.6 136 63.2
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 5.2e-14 81.6 136 63.2
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 5.2e-14 81.6 136 63.2
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 5.2e-14 81.6 136 63.2
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 6.7e-14 81.3 136 58.1
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 2.0e-13 79.7 135 66.7
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 2.6e-13 79.3 137 56.9
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 2.6e-13 79.3 136 63.2
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 3.3e-13 79.0 136 55.1
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 4.4e-13 78.6 159 58.5
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 2.8e-12 75.9 137 55.5
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 6.3e-12 74.7 106 62.3
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 6.3e-12 74.7 133 62.4
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 8.2e-12 74.3 134 62.7
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 4.1e-11 72.0 136 51.5
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 5.3e-11 71.6 161 46.6
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 5.3e-11 71.6 129 46.5
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 2.0e-10 69.7 133 62.4
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 2.6e-10 69.3 90 76.7
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 2.6e-10 69.3 124 54.8
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 4.5e-10 68.6 92 75.0
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 5.9e-10 68.2 64 54.7
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 1.2e-07 60.5 93 73.1
QL09p000872 Quercus lobata HOM05D007581 ORTHO05D009250 1.6e-07 60.1 91 80.2
VMungo0464G1076 Vigna mungo HOM05D007581 ORTHO05D009250 2.7e-07 59.3 119 46.2
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 6.1e-07 58.2 97 61.9
MD02G1202800 Malus domestica HOM05D007581 ORTHO05D009250 6.1e-07 58.2 98 48.0
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 1.4e-06 57.0 97 67.0
PGR102G1605 Punica granatum HOM05D007581 ORTHO05D009250 2.3e-06 56.2 92 78.3
Cfa008025 Carpinus fangiana HOM05D007581 ORTHO05D009250 4.0e-06 55.5 33 75.8


User provided reference genes

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