Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249361 Rosa chinensis HOM05D003270 ORTHO05D003662 1.5e-105 386.3 220 100.0
RcHm_v2.0_Chr1g0333511 Rosa chinensis HOM05D003270 ORTHO05D003662 9.0e-82 307.4 198 90.4
RcHm_v2.0_Chr3g0456851 Rosa chinensis HOM05D003270 ORTHO05D003662 3.8e-80 302.0 202 86.1
RcHm_v2.0_Chr5g0038721 Rosa chinensis HOM05D003270 ORTHO05D003662 9.6e-76 287.3 181 83.4
FvH4_6g07220 Fragaria vesca HOM05D003270 ORTHO05D003662 1.3e-67 260.4 216 68.1
RcHm_v2.0_Chr1g0352421 Rosa chinensis HOM05D003270 ORTHO05D003662 5.3e-66 255.0 194 84.0
FAN05G0778 Fragaria x ananassa HOM05D003270 ORTHO05D003662 9.0e-66 254.2 216 71.3
FAN14G5384 Fragaria x ananassa HOM05D003270 ORTHO05D003662 7.2e-63 244.6 216 66.2
FAN09G4575 Fragaria x ananassa HOM05D003270 ORTHO05D003662 7.4e-60 234.6 216 63.4
FAN02G1275 Fragaria x ananassa HOM05D003270 ORTHO05D003662 1.1e-55 220.7 216 62.0
RcHm_v2.0_Chr2g0129671 Rosa chinensis HOM05D003270 ORTHO05D003662 1.9e-55 219.9 146 85.6
Eucgr.B01665 Eucalyptus grandis HOM05D003270 ORTHO05D003662 1.2e-44 184.1 221 54.3
ClCG02G015100 Citrullus lanatus HOM05D003270 ORTHO05D003662 2.0e-44 183.3 198 59.1
Prupe.6G315100 Prunus persica HOM05D003270 ORTHO05D003662 1.3e-43 180.6 203 58.1
CsaV3_2G006930 Cucumis sativus L. HOM05D003270 ORTHO05D003662 4.8e-43 178.7 200 59.0
Manes.09G175500 Manihot esculenta HOM05D003270 ORTHO05D003662 6.3e-43 178.3 223 52.0
Cpa.g.sc48.143 Carica papaya HOM05D003270 ORTHO05D003662 5.3e-42 175.3 199 57.3
MD04G1195400 Malus domestica HOM05D003270 ORTHO05D003662 7.0e-42 174.9 215 57.2
Manes.08G112500 Manihot esculenta HOM05D003270 ORTHO05D003662 5.9e-41 171.8 203 56.2
Sabra13G0009000 Salix brachista HOM05D003270 ORTHO05D003662 7.7e-41 171.4 213 54.0
TWI12G1061 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 1.0e-40 171.0 198 56.1
Ca_10162_v3 Cicer arietinum L. HOM05D003270 ORTHO05D003662 1.3e-40 170.6 192 55.7
QL03p018283 Quercus lobata HOM05D003270 ORTHO05D003662 2.9e-40 169.5 191 57.6
Duzib128G0340 Durio zibethinus HOM05D003270 ORTHO05D003662 6.5e-40 168.3 213 52.1
Sed0010633 Sechium edule HOM05D003270 ORTHO05D003662 1.9e-39 166.8 193 55.4
CiPaw.08G156700 Carya illinoinensis HOM05D003270 ORTHO05D003662 3.2e-39 166.0 194 59.3
Glyma.20G239500 Glycine max HOM05D003270 ORTHO05D003662 4.2e-39 165.6 219 50.7
Sed0024328 Sechium edule HOM05D003270 ORTHO05D003662 5.5e-39 165.2 198 57.6
CiPaw.07G027900 Carya illinoinensis HOM05D003270 ORTHO05D003662 1.2e-38 164.1 191 55.5
COL.COLO4_04139 Corchorus olitorius HOM05D003270 ORTHO05D003662 1.2e-38 164.1 222 51.8
PGR083G0838 Punica granatum HOM05D003270 ORTHO05D003662 2.1e-38 163.3 201 56.2
Psat0ss9276g0040 Pisum sativum HOM05D003270 ORTHO05D003662 2.7e-38 162.9 237 54.4
Potri.013G010400 Populus trichocarpa HOM05D003270 ORTHO05D003662 2.7e-38 162.9 207 50.7
Thecc.05G320900 Theobroma cacao HOM05D003270 ORTHO05D003662 2.7e-38 162.9 216 51.9
VMungo0720G0293 Vigna mungo HOM05D003270 ORTHO05D003662 2.7e-38 162.9 205 52.7
Dinv24423 Davidia involucrata HOM05D003270 ORTHO05D003662 3.6e-38 162.5 196 52.0
Glyma.03G232100 Glycine max HOM05D003270 ORTHO05D003662 3.0e-37 159.5 210 50.5
Phvul.007G200400 Phaseolus vulgaris HOM05D003270 ORTHO05D003662 6.8e-37 158.3 203 52.2
Sabra05G0013100 Salix brachista HOM05D003270 ORTHO05D003662 1.2e-36 157.5 228 48.2
MD12G1207500 Malus domestica HOM05D003270 ORTHO05D003662 3.4e-36 156.0 211 53.1
Atru.chr5.1050 Acer truncatum HOM05D003270 ORTHO05D003662 5.7e-36 155.2 200 49.5
Glyma.19G229100 Glycine max HOM05D003270 ORTHO05D003662 7.5e-36 154.8 211 48.3
Medtr1g083860 Medicago truncatula HOM05D003270 ORTHO05D003662 7.5e-36 154.8 204 51.0
Sabra05G0025900 Salix brachista HOM05D003270 ORTHO05D003662 7.5e-36 154.8 213 51.2
Ciclev10020563m.g Citrus clementina HOM05D003270 ORTHO05D003662 6.3e-35 151.8 203 49.3
Lj5g0008189 Lotus japonicus HOM05D003270 ORTHO05D003662 3.1e-34 149.4 225 47.1
TAR362G0787 Trochodendron aralioides HOM05D003270 ORTHO05D003662 5.4e-34 148.7 230 45.2
ClCG03G017710 Citrullus lanatus HOM05D003270 ORTHO05D003662 7.0e-34 148.3 209 47.4
Glyma.10G148100 Glycine max HOM05D003270 ORTHO05D003662 7.0e-34 148.3 235 46.8
Nitab4.5_0009033g0010 Nicotiana tabacum HOM05D003270 ORTHO05D003662 9.1e-34 147.9 194 47.4
Gohir.D08G223400 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.2e-33 147.5 192 51.6
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.6e-33 147.1 205 46.8
TWI75G0329 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 1.6e-33 147.1 203 45.8
C06p28310 Brassica napus HOM05D003270 ORTHO05D003662 2.7e-33 146.4 207 45.9
BraA07t30249Z Brassica rapa HOM05D003270 ORTHO05D003662 3.5e-33 146.0 207 45.9
Cc02_g34800 Coffea canephora HOM05D003270 ORTHO05D003662 5.9e-33 145.2 196 48.0
Nitab4.5_0000368g0280 Nicotiana tabacum HOM05D003270 ORTHO05D003662 5.9e-33 145.2 196 49.0
Actinidia21011 Actinidia chinensis HOM05D003270 ORTHO05D003662 7.7e-33 144.8 205 45.9
CANSAT54G2803 Cannabis sativa HOM05D003270 ORTHO05D003662 1.3e-32 144.1 195 56.9
VMungo1383G3394 Vigna mungo HOM05D003270 ORTHO05D003662 1.3e-32 144.1 218 46.3
Phvul.001G225700 Phaseolus vulgaris HOM05D003270 ORTHO05D003662 1.7e-32 143.7 214 44.9
Potri.005G019600 Populus trichocarpa HOM05D003270 ORTHO05D003662 1.7e-32 143.7 213 47.9
BraA09t40862Z Brassica rapa HOM05D003270 ORTHO05D003662 2.2e-32 143.3 210 44.3
TPR.G29277 Trifolium pratense HOM05D003270 ORTHO05D003662 2.9e-32 142.9 210 54.3
BolC6t38001H Brassica oleracea HOM05D003270 ORTHO05D003662 5.0e-32 142.1 199 47.2
Haze_04081 Corylus avellana HOM05D003270 ORTHO05D003662 6.5e-32 141.7 230 45.7
A09p54490 Brassica napus HOM05D003270 ORTHO05D003662 8.5e-32 141.4 209 43.5
Dinv33100 Davidia involucrata HOM05D003270 ORTHO05D003662 8.5e-32 141.4 209 45.9
Peaxi162Scf00673g00111 Petunia axillaris HOM05D003270 ORTHO05D003662 8.5e-32 141.4 196 56.1
A07p26010 Brassica napus HOM05D003270 ORTHO05D003662 1.1e-31 141.0 195 46.7
C08p37380 Brassica napus HOM05D003270 ORTHO05D003662 1.1e-31 141.0 199 46.2
BcaC08g45206 Brassica carinata HOM05D003270 ORTHO05D003662 1.5e-31 140.6 197 47.2
AT3G62630 Arabidopsis thaliana HOM05D003270 ORTHO05D003662 3.2e-31 139.4 203 44.8
BcaC07g40737 Brassica carinata HOM05D003270 ORTHO05D003662 3.2e-31 139.4 199 45.7
BolC8t51316H Brassica oleracea HOM05D003270 ORTHO05D003662 3.2e-31 139.4 199 45.7
Duzib133G0997 Durio zibethinus HOM05D003270 ORTHO05D003662 3.2e-31 139.4 200 46.5
Lj1C19T9 Lonicera japonica HOM05D003270 ORTHO05D003662 3.2e-31 139.4 207 44.0
Gohir.A11G272200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 4.2e-31 139.0 216 49.1
Duzib177G0761 Durio zibethinus HOM05D003270 ORTHO05D003662 5.5e-31 138.7 191 50.3
Lalb_Chr04g0260481 Lupinus albus HOM05D003270 ORTHO05D003662 9.5e-31 137.9 197 57.4
Gorai.013G128900 Gossypium raimondii HOM05D003270 ORTHO05D003662 1.2e-30 137.5 197 51.3
Gohir.A08G206700 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.6e-30 137.1 192 52.6
Gorai.004G237300 Gossypium raimondii HOM05D003270 ORTHO05D003662 1.6e-30 137.1 192 52.6
AL5G45380 Arabidopsis lyrata HOM05D003270 ORTHO05D003662 3.6e-30 136.0 205 44.9
BcaC07g40778 Brassica carinata HOM05D003270 ORTHO05D003662 3.6e-30 136.0 201 43.8
Lalb_Chr06g0167501 Lupinus albus HOM05D003270 ORTHO05D003662 8.0e-30 134.8 174 55.7
HPP92_006895 Vanilla planifolia HOM05D003270 ORTHO05D003662 1.0e-29 134.4 194 49.0
Gohir.A13G111800 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.4e-29 134.0 197 50.3
MBI19_g22895_MAGBIO Magnolia biondii HOM05D003270 ORTHO05D003662 1.4e-29 134.0 211 52.6
Oeu053700.1 Olea europaea HOM05D003270 ORTHO05D003662 1.8e-29 133.7 218 44.0
Aa31LG1G28780 Aethionema arabicum HOM05D003270 ORTHO05D003662 5.2e-29 132.1 207 42.5
TWI18G0328 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 6.8e-29 131.7 204 45.1
Oeu064808.1 Olea europaea HOM05D003270 ORTHO05D003662 8.8e-29 131.3 202 46.0
SHI19885 Sapria himalayana HOM05D003270 ORTHO05D003662 2.6e-28 129.8 194 43.8
Thecc.01G310400 Theobroma cacao HOM05D003270 ORTHO05D003662 2.6e-28 129.8 202 44.6
BcaB02g07333 Brassica carinata HOM05D003270 ORTHO05D003662 3.4e-28 129.4 218 41.7
Lj5P337T13 Lonicera japonica HOM05D003270 ORTHO05D003662 3.4e-28 129.4 202 44.1
Carub.0005s2929 Capsella rubella HOM05D003270 ORTHO05D003662 5.7e-28 128.6 221 40.3
Lalb_Chr02g0147891 Lupinus albus HOM05D003270 ORTHO05D003662 5.7e-28 128.6 181 58.0
Cfa006685 Carpinus fangiana HOM05D003270 ORTHO05D003662 7.5e-28 128.3 177 52.0
Duzib106G1200 Durio zibethinus HOM05D003270 ORTHO05D003662 7.5e-28 128.3 217 44.2
CsaV3_1G038290 Cucumis sativus L. HOM05D003270 ORTHO05D003662 9.8e-28 127.9 211 47.9
Duzib138G1932 Durio zibethinus HOM05D003270 ORTHO05D003662 9.8e-28 127.9 207 42.5
Rhsim11G0093900 Rhododendron simsii HOM05D003270 ORTHO05D003662 9.8e-28 127.9 222 43.7
Lj1g0001768 Lotus japonicus HOM05D003270 ORTHO05D003662 1.3e-27 127.5 212 49.1
Gohir.D11G282400 Gossypium hirsutum HOM05D003270 ORTHO05D003662 3.7e-27 125.9 166 52.4
Gorai.007G124400 Gossypium raimondii HOM05D003270 ORTHO05D003662 4.9e-27 125.6 187 44.4
Gorai.007G305200 Gossypium raimondii HOM05D003270 ORTHO05D003662 4.9e-27 125.6 216 44.9
Gohir.D11G116200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 6.3e-27 125.2 187 44.4
Gohir.D13G114700 Gossypium hirsutum HOM05D003270 ORTHO05D003662 6.3e-27 125.2 201 48.3
Gohir.A13G175300 Gossypium hirsutum HOM05D003270 ORTHO05D003662 8.3e-27 124.8 231 41.6
Gohir.A11G111000 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.1e-26 124.4 187 44.4
Gorai.013G206700 Gossypium raimondii HOM05D003270 ORTHO05D003662 1.4e-26 124.0 233 40.8
Oeu057825.1 Olea europaea HOM05D000201 ORTHO05D001515 2.4e-26 123.2 227 42.3
Lsat_1_v5_gn_5_102781 Lactuca sativa HOM05D003270 ORTHO05D003662 3.1e-26 122.9 191 45.0
TAR633G1026 Trochodendron aralioides HOM05D003270 ORTHO05D003662 4.1e-26 122.5 204 43.6
PGSC0003DMG400045409 Solanum tuberosum HOM05D003270 ORTHO05D003662 9.2e-26 121.3 215 47.9
MSTRG.27960 Avicennia marina HOM05D003270 ORTHO05D003662 1.2e-25 120.9 191 45.0
Cpa.g.sc18.7 Carica papaya HOM05D003270 ORTHO05D003662 1.2e-25 120.9 208 40.4
MSTRG.21671 Avicennia marina HOM05D003270 ORTHO05D003662 1.6e-25 120.6 219 42.5
EL10Ac4g09832 Beta vulgaris HOM05D003270 ORTHO05D003662 2.0e-25 120.2 215 47.4
Duzib211G0334 Durio zibethinus HOM05D003270 ORTHO05D003662 2.0e-25 120.2 202 42.1
Gohir.D13G181200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 5.9e-25 118.6 232 40.1
CARHR172900 Cardamine hirsuta HOM05D003270 ORTHO05D003662 1.0e-24 117.9 206 40.8
THA.LOC104817469 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 1.0e-24 117.9 203 40.4
Thhalv10006025m.g Eutrema salsugineum HOM05D003270 ORTHO05D003662 2.9e-24 116.3 202 39.6
DCAR_012363 Daucus carota HOM05D003270 ORTHO05D003662 3.8e-24 115.9 202 38.6
Sp5g00880 Schrenkiella parvula HOM05D003270 ORTHO05D003662 1.1e-23 114.4 206 39.3
Sc09g0002690 Simmondsia chinensis HOM05D003270 ORTHO05D003662 1.9e-23 113.6 181 45.3
MSTRG.20399 Avicennia marina HOM05D003270 ORTHO05D003662 4.3e-23 112.5 218 39.9
Cfa005832 Carpinus fangiana HOM05D003270 ORTHO05D003662 4.3e-23 112.5 195 40.0
unitig_85.g27177 Utricularia gibba HOM05D003270 ORTHO05D003662 9.5e-23 111.3 194 42.3
Oeu064465.1 Olea europaea HOM05D003270 ORTHO05D003662 1.6e-22 110.5 219 41.6
Hma1.2p1_0472F.1_g159920 Hydrangea macrophylla HOM05D003270 ORTHO05D003662 2.1e-22 110.2 185 41.1
SGA_v2.0_scaffold334G49055 Striga asiatica HOM05D003270 ORTHO05D003662 2.1e-22 110.2 198 40.4
CiPaw.08G091500 Carya illinoinensis HOM05D003270 ORTHO05D003662 3.6e-22 109.4 210 36.7
THA.LOC104802192 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 3.6e-22 109.4 205 39.5
AUR62005271 Chenopodium quinoa HOM05D003270 ORTHO05D003662 4.7e-22 109.0 187 43.3
ECA234G3267 Erigeron canadensis HOM05D003270 ORTHO05D003662 8.0e-22 108.2 210 40.5
Sc16g0008920 Simmondsia chinensis HOM05D003270 ORTHO05D003662 1.8e-21 107.1 198 42.9
HanXRQChr03g0073781 Helianthus annuus HOM05D003270 ORTHO05D003662 3.0e-21 106.3 209 39.7
MBI18_g09595_MAGBIO Magnolia biondii HOM05D003270 ORTHO05D003662 3.0e-21 106.3 168 39.9
SalBow2G3578 Salvia bowleyana HOM05D003270 ORTHO05D003662 3.0e-21 106.3 171 45.0
THA.LOC104825946 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 5.2e-21 105.5 205 39.0
Ciclev10001511m.g Citrus clementina HOM05D003270 ORTHO05D003662 6.8e-21 105.1 208 40.9
Hma1.2p1_0008F-1.1_g005770 Hydrangea macrophylla HOM05D003270 ORTHO05D003662 1.2e-20 104.4 180 42.8
HanXRQChr10g0299241 Helianthus annuus HOM05D003270 ORTHO05D003662 1.5e-20 104.0 182 41.8
Lsat_1_v5_gn_9_122521 Lactuca sativa HOM05D003270 ORTHO05D003662 4.4e-20 102.4 223 39.5
COL.COLO4_23261 Corchorus olitorius HOM05D003270 ORTHO05D003662 9.8e-20 101.3 189 45.5
Migut.D00099 Erythranthe guttata HOM05D003270 ORTHO05D003662 6.4e-19 98.6 193 45.1
Atru.chr2.147 Acer truncatum HOM05D003270 ORTHO05D003662 8.3e-19 98.2 208 50.0
Aa31LG10G16440 Aethionema arabicum HOM05D003270 ORTHO05D003662 1.1e-18 97.8 219 35.6
CAN.G1273.2 Capsicum annuum HOM05D003270 ORTHO05D003662 1.8e-18 97.1 197 47.7
MELO3C015259.2 Cucumis melo HOM05D003270 ORTHO05D003662 2.4e-18 96.7 92 59.8
Migut.B00996 Erythranthe guttata HOM05D003270 ORTHO05D003662 4.1e-18 95.9 196 41.8
CDE11G0260 Ceratophyllum demersum HOM05D003270 ORTHO05D003662 1.6e-17 94.0 205 38.0
SEGI_37418 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 2.7e-17 93.2 208 37.5
Oeu006467.1 Olea europaea HOM05D003270 ORTHO05D003662 1.7e-16 90.5 194 40.7
Dinv10073 Davidia involucrata HOM05D003270 ORTHO05D003662 3.9e-16 89.4 104 50.0
TAR365G1126 Trochodendron aralioides HOM05D003270 ORTHO05D003662 5.0e-16 89.0 161 41.0
Rhsim01G0289300 Rhododendron simsii HOM05D003270 ORTHO05D003662 6.6e-16 88.6 208 35.6
vmacro01553 Vaccinium macrocarpon HOM05D003270 ORTHO05D003662 1.5e-15 87.4 215 33.0
Haze_05011 Corylus avellana HOM05D003270 ORTHO05D003662 1.2e-14 84.3 191 35.1
Nn2g14322 Nelumbo nucifera HOM05D003270 ORTHO05D003662 1.6e-14 84.0 208 35.6
Solyc01g100310.2 Solanum lycopersicum HOM05D003270 ORTHO05D003662 1.2e-12 77.8 215 39.1
Sopen01g043820 Solanum pennellii HOM05D003270 ORTHO05D003662 2.6e-12 76.6 217 40.1
PSO210G1568 Papaver somniferum HOM05D003270 ORTHO05D003662 4.4e-12 75.9 192 42.7
PSO761G0218 Papaver somniferum HOM05D003270 ORTHO05D003662 4.4e-12 75.9 204 41.2
CDE05G1863 Ceratophyllum demersum HOM05D003270 ORTHO05D003662 7.5e-12 75.1 206 33.5
SGA_v2.0_scaffold81G26119 Striga asiatica HOM05D003270 ORTHO05D003662 9.8e-12 74.7 192 36.5
Aqoxy2G02803 Aquilegia oxysepala HOM05D003270 ORTHO05D003662 2.2e-11 73.6 208 34.1
SalBow8G3220 Salvia bowleyana HOM05D003270 ORTHO05D003662 8.3e-11 71.6 90 50.0
MELO3C004199.2 Cucumis melo HOM05D003270 ORTHO05D003662 1.4e-10 70.9 55 69.1
Lju1295C4T4 Lonicera japonica HOM05D003270 ORTHO05D003662 1.4e-10 70.9 91 49.5
ATR0706G204 Amborella trichopoda HOM05D003270 ORTHO05D003662 4.1e-10 69.3 224 31.7
SalBow6G5933 Salvia bowleyana HOM05D003270 ORTHO05D003662 7.0e-10 68.6 90 47.8
GSVIVG01028087001 Vitis vinifera HOM05D003270 ORTHO05D003662 1.6e-09 67.4 59 55.9
Dinv30870 Davidia involucrata HOM05D003270 ORTHO05D003662 6.0e-09 65.5 121 39.7
Aqoxy6G02451 Aquilegia oxysepala HOM05D003270 ORTHO05D003662 1.3e-08 64.3 189 33.9
SEGI_18254 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 1.3e-08 64.3 207 31.9
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 8.6e-08 61.6 44 65.9
Oeu008454.1 Olea europaea HOM05D003270 ORTHO05D003662 1.6e-06 57.4 80 45.0
Os03g0303100 Oryza sativa ssp. japonica HOM05D003270 ORTHO05D003662 2.1e-06 57.0 186 34.4
Os11g0672900 Oryza sativa ssp. japonica HOM05D003270 ORTHO05D003662 3.6e-06 56.2 182 31.3


User provided reference genes

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