Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249161 Rosa chinensis HOM05D008702 ORTHO05D003639 2.8e-194 681.8 353 100.0
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.7e-159 566.2 298 99.3
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 2.4e-153 545.8 292 97.6
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 2.0e-152 542.7 292 97.6
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 9.5e-150 533.9 292 96.2
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 1.1e-129 467.2 252 96.8
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 2.4e-121 439.5 252 84.5
RcHm_v2.0_Chr1g0320711 Rosa chinensis HOM05D008702 ORTHO05D003639 3.5e-59 233.0 144 81.9
RcHm_v2.0_Chr5g0038251 Rosa chinensis HOM05D008702 ORTHO05D003639 3.1e-52 209.9 144 75.7
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 3.7e-45 186.4 156 65.4
RcHm_v2.0_Chr5g0076651 Rosa chinensis HOM05D008702 ORTHO05D003639 1.2e-40 171.4 92 92.4
RcHm_v2.0_Chr5g0038271 Rosa chinensis HOM05D008702 ORTHO05D003639 7.5e-38 162.2 114 73.7
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 1.7e-34 151.0 290 32.1
RcHm_v2.0_Chr1g0321621 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-33 147.5 139 60.4
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 1.1e-31 141.7 288 31.6
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 4.0e-31 139.8 247 34.0
RcHm_v2.0_Chr6g0291271 Rosa chinensis HOM05D009149 ORTHO05D003639 2.6e-30 137.1 285 31.2
RcHm_v2.0_Chr2g0131351 Rosa chinensis HOM05D009149 ORTHO05D003639 9.8e-30 135.2 278 31.3
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 2.9e-29 133.7 247 33.2
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 2.9e-29 133.7 233 32.6
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 4.9e-29 132.9 233 32.6
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.4e-28 130.6 266 33.1
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 9.2e-28 128.6 233 31.8
FvH4_1g21382 Fragaria vesca HOM05D016497 ORTHO05D019154 1.2e-27 128.3 170 40.0
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 1.2e-27 128.3 287 31.7
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.0e-27 127.5 256 31.6
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.7e-27 127.1 264 32.2
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 7.8e-27 125.6 238 34.5
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.7e-26 124.4 288 31.6
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 3.0e-26 123.6 282 29.4
RcHm_v2.0_Chr1g0336001 Rosa chinensis HOM05D009149 ORTHO05D003639 8.6e-26 122.1 277 29.2
RcHm_v2.0_Chr4g0419521 Rosa chinensis HOM05D009149 ORTHO05D003639 1.1e-25 121.7 213 33.3
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 1.5e-25 121.3 245 31.0
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.6e-25 119.4 192 36.5
RcHm_v2.0_Chr1g0317351 Rosa chinensis HOM05D008702 ORTHO05D003639 9.5e-25 118.6 66 90.9
Peaxi162Scf00169g00112 Petunia axillaris HOM05D008778 ORTHO05D003639 2.8e-24 117.1 181 34.8
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 2.8e-24 117.1 281 29.9
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.6e-24 116.7 176 36.9
RcHm_v2.0_Chr5g0038131 Rosa chinensis HOM05D008702 ORTHO05D003639 4.7e-24 116.3 101 63.4
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 2.3e-23 114.0 279 30.5
RcHm_v2.0_Chr7g0219691 Rosa chinensis HOM05D008702 ORTHO05D003639 8.9e-23 112.1 61 93.4
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 1.2e-22 111.7 198 33.3
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 4.4e-22 109.8 241 29.9
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 7.5e-22 109.0 156 36.5
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 9.9e-22 108.6 182 34.6
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.4e-21 105.9 111 42.3
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 5.4e-20 102.8 184 34.8
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 3.5e-19 100.1 239 27.2
RcHm_v2.0_Chr2g0133021 Rosa chinensis HOM05D009149 ORTHO05D003639 2.3e-18 97.4 108 42.6
RcHm_v2.0_Chr6g0263251 Rosa chinensis HOM05D008702 ORTHO05D003639 1.5e-17 94.7 51 96.1
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 2.1e-16 90.9 190 29.5
Prupe.6G164100 Prunus persica HOM05D008702 ORTHO05D003639 5.2e-15 86.3 133 36.1
RcHm_v2.0_Chr3g0456191 Rosa chinensis HOM05D009149 ORTHO05D003639 5.2e-15 86.3 191 31.4
RcHm_v2.0_Chr7g0238731 Rosa chinensis HOM05D008702 ORTHO05D003639 1.2e-14 85.1 41 97.6
FvH4_2g35573 Fragaria vesca HOM05D009149 ORTHO05D003639 6.4e-13 79.3 79 45.6
FvH4_3g19371 Fragaria vesca HOM05D019635 ORTHO05D029381 6.4e-13 79.3 194 29.9
CSS0049833 Camellia sinensis var. sinensis HOM05D009149 ORTHO05D003639 1.4e-12 78.2 77 46.8
RcHm_v2.0_Chr5g0076791 Rosa chinensis HOM05D025191 ORTHO05D026112 1.4e-12 78.2 245 26.9
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 1.4e-12 78.2 247 26.3
COL.COLO4_28241 Corchorus olitorius HOM05D015644 ORTHO05D016958 2.4e-12 77.4 127 33.1
FvH4_4g05271 Fragaria vesca HOM05D019635 ORTHO05D029381 5.4e-12 76.3 194 29.4
Peaxi162Scf00820g00019 Petunia axillaris HOM05D008778 ORTHO05D003639 1.6e-11 74.7 183 30.6
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 1.6e-11 74.7 245 25.3
arahy.Tifrunner.gnm1.ann1.8YAR3M Arachis hypogaea HOM05D018927 ORTHO05D003639 2.7e-11 73.9 224 27.2
COL.COLO4_04628 Corchorus olitorius HOM05D015644 ORTHO05D016958 6.0e-11 72.8 133 31.6
Sed0015741 Sechium edule HOM05D001371 ORTHO05D001319 3.0e-10 70.5 207 24.6
COL.COLO4_22820 Corchorus olitorius HOM05D001371 ORTHO05D001319 3.9e-10 70.1 129 27.9
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 6.6e-10 69.3 36 88.9
Sc08g0005440 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.6e-09 66.2 79 44.3
arahy.Tifrunner.gnm1.ann1.D35KDK Arachis hypogaea HOM05D008778 ORTHO05D003639 9.6e-09 65.5 101 32.7
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 1.2e-08 65.1 128 29.7
Eucgr.F03452 Eucalyptus grandis HOM05D001371 ORTHO05D001319 2.8e-08 63.9 83 39.8
Nn1g03577 Nelumbo nucifera HOM05D001371 ORTHO05D001319 2.8e-08 63.9 145 28.3
VMungo0540G1413 Vigna mungo HOM05D001371 ORTHO05D001319 2.8e-08 63.9 133 25.6
Aqoxy7G03260 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 3.6e-08 63.5 127 26.8
Lj8C168T14 Lonicera japonica HOM05D001371 ORTHO05D001319 3.6e-08 63.5 126 27.0
Ca_14714_v3 Cicer arietinum L. HOM05D001371 ORTHO05D001319 4.7e-08 63.2 148 26.4
Actinidia35333 Actinidia chinensis HOM05D001371 ORTHO05D001319 6.2e-08 62.8 187 23.0
Eucgr.F03451 Eucalyptus grandis HOM05D001371 ORTHO05D001319 6.2e-08 62.8 193 23.3
HPP92_005289 Vanilla planifolia HOM05D001371 ORTHO05D001319 8.1e-08 62.4 87 33.3
Ah.04g165720 Amaranthus hybridus HOM05D001371 ORTHO05D001319 1.4e-07 61.6 102 32.4
COL.COLO4_09640 Corchorus olitorius HOM05D001371 ORTHO05D001319 1.8e-07 61.2 180 23.9
arahy.Tifrunner.gnm1.ann1.UWY4YC Arachis hypogaea HOM05D001371 ORTHO05D001319 2.4e-07 60.8 143 27.3
arahy.Tifrunner.gnm1.ann1.Y9R7EH Arachis hypogaea HOM05D001371 ORTHO05D001319 2.4e-07 60.8 143 27.3
AT1G51538 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 3.1e-07 60.5 198 24.2
EL10Ac4g07870 Beta vulgaris HOM05D001371 ORTHO05D001319 3.1e-07 60.5 194 24.2
Rhsim02G0176100 Rhododendron simsii HOM05D008778 ORTHO05D003639 3.1e-07 60.5 70 40.0
Zm00001eb163540 Zea mays HOM05D001371 ORTHO05D001319 3.1e-07 60.5 84 33.3
AT5G18510 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 4.0e-07 60.1 159 24.5
QL08p011658 Quercus lobata HOM05D001371 ORTHO05D001319 4.0e-07 60.1 194 24.7
Sc07g0004510 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.2e-07 59.7 85 37.6
Sc11g0004150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.2e-07 59.7 80 38.8
EL10Ac4g07868 Beta vulgaris HOM05D001371 ORTHO05D001319 6.9e-07 59.3 88 31.8
AUR62015722 Chenopodium quinoa HOM05D001371 ORTHO05D001319 6.9e-07 59.3 200 27.0
MELO3C018073.2 Cucumis melo HOM05D001371 ORTHO05D001319 6.9e-07 59.3 174 23.6
FvH4_7g03073 Fragaria vesca HOM05D019635 ORTHO05D029381 9.0e-07 58.9 172 26.7
Lalb_Chr02g0155751 Lupinus albus HOM05D001371 ORTHO05D001319 9.0e-07 58.9 146 27.4
Aa31LG10G3280 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.2e-06 58.5 134 30.6
Ah.12g058160 Amaranthus hybridus HOM05D001371 ORTHO05D001319 1.2e-06 58.5 138 31.2
Oeu036518.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-06 58.5 195 24.1
Sc05g0005050 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.2e-06 58.5 111 33.3
CsaV3_3G023310 Cucumis sativus L. HOM05D001371 ORTHO05D001319 1.5e-06 58.2 87 31.0
Nitab4.5_0007952g0010 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.0e-06 57.8 119 29.4
Sc15g0002320 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.0e-06 57.8 66 47.0
Nitab4.5_0001604g0020 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.6e-06 57.4 131 27.5
Os03g0565300 Oryza sativa ssp. japonica HOM05D001371 ORTHO05D001319 2.6e-06 57.4 88 31.8
Peaxi162Scf00094g01122 Petunia axillaris HOM05D001371 ORTHO05D001319 2.6e-06 57.4 124 29.8
Ca_27398_v3 Cicer arietinum L. HOM05D001371 ORTHO05D001319 3.4e-06 57.0 148 24.3
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 4.4e-06 56.6 89 32.6
Thhalv10012017m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 4.4e-06 56.6 81 34.6
Peaxi162Scf00425g00006 Petunia axillaris HOM05D001371 ORTHO05D001319 4.4e-06 56.6 87 33.3
Peaxi162Scf00575g00094 Petunia axillaris HOM05D001371 ORTHO05D001319 4.4e-06 56.6 87 33.3
Sc14g0002490 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.4e-06 56.6 75 40.0
Aa31LG3G13050 Aethionema arabicum HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 33.7
BcaC05g27237 Brassica carinata HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 32.6
BcaC08g43256 Brassica carinata HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 34.8
C05p31530 Brassica napus HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 32.6
C06p06020 Brassica napus HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 34.8
BolC5t31877H Brassica oleracea HOM05D001371 ORTHO05D001016 5.8e-06 56.2 89 32.6
BolC6t35715H Brassica oleracea HOM05D001371 ORTHO05D001319 5.8e-06 56.2 89 34.8
Oeu025616.1 Olea europaea HOM05D007843 ORTHO05D003639 5.8e-06 56.2 191 25.1
Oeu026052.1 Olea europaea HOM05D007843 ORTHO05D003639 5.8e-06 56.2 170 28.8
Lj6g0000404 Lotus japonicus HOM05D001371 ORTHO05D001319 7.6e-06 55.8 109 28.4
Sc17g0003520 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.6e-06 55.8 75 40.0
AUR62020481 Chenopodium quinoa HOM05D001371 ORTHO05D001319 9.9e-06 55.5 78 37.2
Oeu030935.1 Olea europaea HOM05D007843 ORTHO05D003639 9.9e-06 55.5 166 27.1
QL08p011662 Quercus lobata HOM05D001371 ORTHO05D001319 9.9e-06 55.5 193 24.4
Sc03g0004300 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.9e-06 55.5 67 41.8
Sopen07g032530 Solanum pennellii HOM05D001371 ORTHO05D001319 9.9e-06 55.5 132 26.5


User provided reference genes

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