Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 3.9e-27 124.0 60 100.0
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 6.4e-22 106.7 54 92.6
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.4e-21 105.5 52 96.2
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.2e-21 104.4 51 96.1
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 3.2e-21 104.4 51 96.1
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 5.4e-21 103.6 54 88.9
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 9.2e-21 102.8 51 94.1
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.2e-21 102.8 51 94.1
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.2e-21 102.8 51 94.1
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.2e-20 102.4 51 94.1
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.6e-20 102.1 51 92.2
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.6e-20 102.1 51 94.1
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.6e-20 102.1 51 94.1
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.6e-20 102.1 50 96.0
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.6e-20 102.1 51 92.2
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.6e-20 102.1 50 96.0
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.6e-20 102.1 50 96.0
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.6e-20 102.1 50 96.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.7e-20 101.3 55 87.3
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-20 101.3 51 92.2
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.5e-20 100.9 51 90.2
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.5e-20 100.9 51 92.2
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.5e-20 100.9 51 92.2
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 3.5e-20 100.9 51 90.2
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.0e-20 100.1 50 94.0
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 90.2
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.0e-20 100.1 51 92.2
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.8e-20 99.8 50 92.0
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.8e-20 99.8 51 90.2
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 1.0e-19 99.4 51 90.2
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 1.0e-19 99.4 49 95.9
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 90.2
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 90.2
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 88.2
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 88.2
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 88.2
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 88.2
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 90.2
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.3e-19 99.0 51 90.2
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.7e-19 98.6 51 88.2
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.7e-19 98.6 51 88.2
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.7e-19 98.6 51 88.2
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 2.3e-19 98.2 51 90.2
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 3.9e-19 97.4 53 90.6
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 5.0e-19 97.1 51 90.2
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 5.0e-19 97.1 51 86.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 6.6e-19 96.7 51 88.2
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 6.6e-19 96.7 51 90.2
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 6.6e-19 96.7 51 90.2
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 8.6e-19 96.3 50 88.0
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.1e-18 95.9 51 86.3
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.5e-18 95.5 47 95.7
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 3.3e-18 94.4 52 82.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 5.6e-18 93.6 51 86.3
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.6e-17 90.9 50 84.0
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.6e-17 90.9 50 84.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.6e-17 90.9 50 84.0
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.0e-16 87.4 50 78.0
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.4e-15 84.3 63 68.3
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 3.4e-15 84.3 50 74.0
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.5e-15 83.2 50 76.0
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.7e-14 82.0 49 75.5
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 4.9e-14 80.5 52 65.4
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.1e-13 79.3 50 72.0
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.6e-11 70.1 37 89.2
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.6e-11 70.1 37 89.2
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 2.8e-09 64.7 32 96.9
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.4e-08 62.4 32 90.6
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 5.2e-08 60.5 31 93.5
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 7.6e-07 56.6 28 89.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.2e-06 55.1 34 73.5
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.9e-06 54.7 30 80.0


User provided reference genes

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