Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 2.3e-58 228.8 126 100.0
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 4.3e-28 128.3 98 75.5
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.1e-27 125.9 110 69.1
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 5.6e-20 101.3 101 63.4
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.2e-17 93.6 104 52.9
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.0e-17 92.8 100 57.0
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 6.4e-16 87.8 105 51.4
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 2.7e-14 82.4 103 51.5
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 2.7e-14 82.4 106 47.2
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 6.0e-14 81.3 82 57.3
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 7.9e-14 80.9 83 59.0
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.7e-13 79.7 93 49.5
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.3e-13 79.3 100 48.0
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 5.1e-13 78.2 110 50.0
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 5.1e-13 78.2 110 50.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 5.1e-13 78.2 96 49.0
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 5.1e-13 78.2 82 56.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 5.1e-13 78.2 85 55.3
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 6.6e-13 77.8 110 50.0
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 8.7e-13 77.4 100 47.0
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.1e-12 77.0 99 47.5
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.5e-12 76.6 105 47.6
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 4.3e-12 75.1 106 44.3
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 4.3e-12 75.1 98 48.0
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 7.4e-12 74.3 95 49.5
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 9.6e-12 73.9 82 56.1
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.6e-11 73.2 100 47.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.6e-11 73.2 94 48.9
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 2.8e-11 72.4 105 46.7
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 2.8e-11 72.4 102 45.1
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 3.6e-11 72.0 80 52.5
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 4.8e-11 71.6 107 45.8
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 4.8e-11 71.6 107 45.8
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 6.2e-11 71.2 88 46.6
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 6.2e-11 71.2 75 50.7
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 8.1e-11 70.9 80 53.8
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 8.1e-11 70.9 80 50.0
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 8.1e-11 70.9 103 46.6
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 8.1e-11 70.9 106 47.2
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 1.1e-10 70.5 107 46.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.8e-10 69.7 88 48.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.8e-10 69.7 65 55.4
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.8e-10 69.7 102 46.1
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 2.4e-10 69.3 97 46.4
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 2.4e-10 69.3 80 50.0
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.1e-10 68.9 82 50.0
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 4.0e-10 68.6 103 45.6
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 5.3e-10 68.2 80 51.2
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 6.9e-10 67.8 66 54.5
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.2e-09 67.0 69 52.2
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.5e-09 66.6 107 43.0
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 1.5e-09 66.6 99 45.5
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.5e-09 66.6 98 42.9
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.0e-09 66.2 107 43.0
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.6e-09 65.9 67 55.2
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 2.6e-09 65.9 76 51.3
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 3.4e-09 65.5 80 46.2
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 3.4e-09 65.5 80 46.2
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 4.5e-09 65.1 95 43.2
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 7.6e-09 64.3 86 47.7
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 1.3e-08 63.5 95 42.1
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.7e-08 63.2 69 49.3
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 1.7e-08 63.2 67 52.2
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 4.9e-08 61.6 75 48.0
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 6.4e-08 61.2 100 39.0
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 8.4e-08 60.8 110 41.8
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.1e-07 60.5 100 39.0
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.4e-07 60.1 109 39.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 1.9e-07 59.7 94 44.7
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 2.4e-07 59.3 59 62.7
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 3.2e-07 58.9 98 37.8
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 2.1e-06 56.2 90 43.3


User provided reference genes

Program Settings