Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.6e-88 329.3 159 100.0
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 5.9e-83 310.8 157 94.3
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.9e-82 308.5 157 93.6
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 6.5e-82 307.4 157 92.4
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.5e-81 306.2 157 93.0
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.9e-81 305.8 157 93.0
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 5.2e-71 271.2 143 88.1
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 6.8e-71 270.8 156 82.1
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 8.3e-69 263.8 157 80.3
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.0e-67 259.2 162 79.0
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.1e-65 253.4 143 81.8
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.5e-65 253.1 157 76.4
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 1.5e-65 253.1 158 79.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.9e-65 252.7 155 76.8
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 5.5e-65 251.1 157 76.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 1.2e-64 250.0 157 79.0
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 8.8e-63 243.8 150 76.0
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.2e-62 243.4 143 76.9
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.6e-62 242.3 142 76.8
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 4.4e-62 241.5 159 74.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.4e-62 241.5 142 78.2
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.7e-61 239.6 151 74.8
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.7e-61 238.4 145 75.2
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 6.3e-61 237.7 150 73.3
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 8.3e-61 237.3 154 73.4
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 1.1e-60 236.9 159 71.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.1e-60 236.9 152 74.3
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 1.1e-60 236.9 144 76.4
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 1.4e-60 236.5 155 74.8
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 1.8e-60 236.1 149 73.2
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 1.8e-60 236.1 149 72.5
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 4.1e-60 235.0 143 75.5
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 4.1e-60 235.0 154 73.4
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 4.1e-60 235.0 160 69.4
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 4.1e-60 235.0 153 73.9
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 5.4e-60 234.6 129 84.5
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 5.4e-60 234.6 154 73.4
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 5.4e-60 234.6 154 73.4
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 5.4e-60 234.6 161 71.4
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.4e-60 234.6 153 73.9
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 7.0e-60 234.2 155 73.5
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 9.1e-60 233.8 144 77.8
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.2e-59 233.4 153 73.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 1.6e-59 233.0 156 69.9
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 2.0e-59 232.6 160 67.5
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 3.5e-59 231.9 155 74.2
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 3.5e-59 231.9 149 71.8
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 5.9e-59 231.1 154 72.1
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 5.9e-59 231.1 154 72.1
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 5.9e-59 231.1 154 72.1
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.0e-58 230.3 143 74.8
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 1.3e-58 229.9 155 72.9
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.3e-58 229.9 140 75.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.7e-58 229.6 149 75.8
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 2.3e-58 229.2 145 75.2
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 5.0e-58 228.0 159 69.8
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 6.6e-58 227.6 143 75.5
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.1e-57 226.9 145 74.5
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.5e-57 226.5 159 71.1
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.5e-57 226.5 143 74.1
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.5e-57 225.7 159 69.8
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 2.5e-57 225.7 160 67.5
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 5.5e-57 224.6 154 70.8
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 7.2e-57 224.2 153 73.2
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 9.5e-57 223.8 139 71.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.2e-56 223.4 160 70.6
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 2.8e-56 222.2 159 67.3
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 3.6e-56 221.9 147 70.1
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 4.7e-56 221.5 157 69.4
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 4.7e-56 221.5 142 75.4
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 8.0e-56 220.7 153 68.0
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 3.0e-55 218.8 152 70.4
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.0e-55 218.8 142 74.6
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 3.0e-55 218.8 143 75.5
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 4.0e-55 218.4 144 73.6
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.6e-54 215.7 143 73.4
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 4.4e-54 214.9 155 68.4
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.8e-52 209.5 139 68.3
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 7.8e-51 204.1 138 75.4
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.7e-50 203.0 158 67.1
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 2.9e-50 202.2 140 68.6
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 8.6e-50 200.7 137 74.5
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.5e-49 199.9 142 69.0
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 4.3e-49 198.4 141 64.5
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 5.6e-49 198.0 139 68.3
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 6.8e-47 191.0 141 65.2
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 1.4e-44 183.3 134 61.9
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.1e-44 181.8 146 60.3
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.1e-44 181.8 146 60.3
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 5.6e-41 171.4 107 72.9
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.6e-40 169.9 139 58.3
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 6.2e-40 167.9 160 58.1
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.2e-38 163.7 149 60.4
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 1.7e-37 159.8 135 54.8
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 5.4e-36 154.8 151 53.6
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 6.0e-35 151.4 154 53.9
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.0e-34 150.6 133 54.1
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.7e-34 149.8 105 70.5
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 3.9e-34 148.7 152 50.0
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 5.1e-34 148.3 98 73.5
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 1.9e-33 146.4 134 52.2
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 4.3e-33 145.2 95 71.6
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 7.3e-33 144.4 144 53.5
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 7.3e-33 144.4 106 69.8
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 2.8e-32 142.5 133 53.4
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.7e-27 125.9 138 48.6
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.8e-23 113.2 73 74.0
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 2.0e-22 109.8 104 58.7
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 5.8e-22 108.2 120 48.3
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 7.8e-19 97.8 104 53.8
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 2.5e-17 92.8 157 38.2
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 9.6e-17 90.9 158 36.7


User provided reference genes

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