Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0248211 Rosa chinensis HOM05D002293 ORTHO05D006850 9.2e-53 209.9 103 100.0
RcHm_v2.0_Chr3g0461771 Rosa chinensis HOM05D002293 ORTHO05D006850 4.5e-52 207.6 103 99.0
RcHm_v2.0_Chr5g0074521 Rosa chinensis HOM05D002293 ORTHO05D006850 4.5e-52 207.6 103 99.0
RcHm_v2.0_Chr2g0158691 Rosa chinensis HOM05D002293 ORTHO05D006850 2.9e-51 204.9 103 98.1
RcHm_v2.0_Chr5g0060841 Rosa chinensis HOM05D002293 ORTHO05D006850 2.9e-51 204.9 103 98.1
RcHm_v2.0_Chr4g0391611 Rosa chinensis HOM05D002293 ORTHO05D006850 4.7e-33 144.4 71 100.0
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.5e-26 122.9 94 69.1
FvH4_1g22881 Fragaria vesca HOM05D002293 ORTHO05D006850 3.3e-26 121.7 94 68.1
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.3e-26 121.7 94 68.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.6e-26 120.9 94 68.1
RcHm_v2.0_Chr2g0117221 Rosa chinensis HOM05D002293 ORTHO05D006850 1.2e-25 119.8 94 67.0
Haze_25058 Corylus avellana HOM05D002293 ORTHO05D006850 2.4e-24 115.5 77 74.0
CiPaw.04G090700 Carya illinoinensis HOM05D002293 ORTHO05D006850 6.8e-24 114.0 94 63.8
Prupe.6G169400 Prunus persica HOM05D002293 ORTHO05D006850 6.8e-24 114.0 91 64.8
arahy.Tifrunner.gnm1.ann1.U9B4SP Arachis hypogaea HOM05D000087 ORTHO05D000439 1.5e-23 112.8 92 65.2
Nitab4.5_0004378g0040 Nicotiana tabacum HOM05D002293 ORTHO05D006850 1.5e-23 112.8 92 63.0
QL06p031806 Quercus lobata HOM05D002293 ORTHO05D006850 1.5e-23 112.8 85 67.1
Nn5g28872 Nelumbo nucifera HOM05D002293 ORTHO05D006850 2.0e-23 112.5 75 74.7
A05p39450 Brassica napus HOM05D002293 ORTHO05D006850 2.6e-23 112.1 87 64.4
ClCG01G015990 Citrullus lanatus HOM05D002293 ORTHO05D006850 2.6e-23 112.1 94 62.8
Eucgr.I00313 Eucalyptus grandis HOM05D002293 ORTHO05D006850 2.6e-23 112.1 92 63.0
Nitab4.5_0000818g0200 Nicotiana tabacum HOM05D002293 ORTHO05D006850 2.6e-23 112.1 92 63.0
arahy.Tifrunner.gnm1.ann1.X6B8P2 Arachis hypogaea HOM05D002293 ORTHO05D006850 3.4e-23 111.7 76 72.4
CAN.G871.5 Capsicum annuum HOM05D002293 ORTHO05D006850 3.4e-23 111.7 92 63.0
Dinv19472 Davidia involucrata HOM05D002293 ORTHO05D006850 4.4e-23 111.3 77 71.4
CsaV3_6G042270 Cucumis sativus L. HOM05D002293 ORTHO05D006850 5.8e-23 110.9 94 62.8
Lj4A864T21 Lonicera japonica HOM05D002293 ORTHO05D006850 5.8e-23 110.9 74 74.3
Aqoxy6G00443 Aquilegia oxysepala HOM05D002293 ORTHO05D006850 7.6e-23 110.5 75 73.3
MELO3C007469.2 Cucumis melo HOM05D002293 ORTHO05D006850 7.6e-23 110.5 94 61.7
Oeu044096.1 Olea europaea HOM05D002293 ORTHO05D006850 7.6e-23 110.5 94 60.6
Peaxi162Scf00167g00513 Petunia axillaris HOM05D002293 ORTHO05D006850 7.6e-23 110.5 91 63.7
PSO675G5492 Papaver somniferum HOM05D002293 ORTHO05D006850 9.9e-23 110.2 75 73.3
Sed0022357 Sechium edule HOM05D002293 ORTHO05D006850 9.9e-23 110.2 94 61.7
vmacro18641 Vaccinium macrocarpon HOM05D002293 ORTHO05D006850 1.3e-22 109.8 90 62.2
BraA05t22726Z Brassica rapa HOM05D002293 ORTHO05D006850 1.7e-22 109.4 85 64.7
CANSAT01G3021 Cannabis sativa HOM05D002293 ORTHO05D006850 2.2e-22 109.0 91 61.5
TWI75G0731 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 2.2e-22 109.0 90 63.3
Actinidia12213 Actinidia chinensis HOM05D002293 ORTHO05D006850 2.9e-22 108.6 104 58.7
MD15G1331200 Malus domestica HOM05D002293 ORTHO05D006850 2.9e-22 108.6 92 60.9
Solyc05g051700.3 Solanum lycopersicum HOM05D002293 ORTHO05D006850 2.9e-22 108.6 92 62.0
BcaC03g13134 Brassica carinata HOM05D002293 ORTHO05D006850 3.8e-22 108.2 78 65.4
Rhsim07G0116300 Rhododendron simsii HOM05D002293 ORTHO05D006850 3.8e-22 108.2 92 60.9
Rhsim08G0005400 Rhododendron simsii HOM05D002293 ORTHO05D006850 3.8e-22 108.2 92 60.9
ATR1120G068 Amborella trichopoda HOM05D002293 ORTHO05D006850 4.9e-22 107.8 86 64.0
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 4.9e-22 107.8 96 57.3
PSO541G6313 Papaver somniferum HOM05D002293 ORTHO05D006850 4.9e-22 107.8 75 72.0
Phvul.002G265600 Phaseolus vulgaris HOM05D002293 ORTHO05D006850 6.4e-22 107.5 94 58.5
Thecc.01G114900 Theobroma cacao HOM05D002293 ORTHO05D006850 6.4e-22 107.5 92 60.9
Glyma.08G142700 Glycine max HOM05D002293 ORTHO05D006850 8.4e-22 107.1 94 57.4
SalBow5G0495 Salvia bowleyana HOM05D002293 ORTHO05D006850 8.4e-22 107.1 92 60.9
Sopen05g030170 Solanum pennellii HOM05D002293 ORTHO05D006850 8.4e-22 107.1 89 62.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.4e-22 107.1 92 59.8
A08p33930 Brassica napus HOM05D002293 ORTHO05D006850 1.1e-21 106.7 89 62.9
C08p13740 Brassica napus HOM05D002293 ORTHO05D006850 1.1e-21 106.7 101 58.4
BraA08t35307Z Brassica rapa HOM05D002293 ORTHO05D006850 1.1e-21 106.7 89 62.9
Cpa.g.sc72.2 Carica papaya HOM05D002293 ORTHO05D006850 1.4e-21 106.3 87 63.2
Thhalv10008651m.g Eutrema salsugineum HOM05D002293 ORTHO05D006850 1.4e-21 106.3 92 60.9
Gohir.A10G084000 Gossypium hirsutum HOM05D002293 ORTHO05D006850 1.4e-21 106.3 92 59.8
TWI79G1666 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 1.4e-21 106.3 91 61.5
Lsat_1_v5_gn_5_39360 Lactuca sativa HOM05D002293 ORTHO05D006850 1.9e-21 105.9 77 68.8
AT1G10500 Arabidopsis thaliana HOM05D002293 ORTHO05D006850 2.4e-21 105.5 92 60.9
BcaC07g38568 Brassica carinata HOM05D002293 ORTHO05D006850 2.4e-21 105.5 101 57.4
BcaC07g38606 Brassica carinata HOM05D002293 ORTHO05D006850 2.4e-21 105.5 89 61.8
BolC8t49009H Brassica oleracea HOM05D002293 ORTHO05D006850 2.4e-21 105.5 101 57.4
COL.COLO4_10996 Corchorus olitorius HOM05D002293 ORTHO05D006850 2.4e-21 105.5 91 59.3
Potri.005G085400 Populus trichocarpa HOM05D002293 ORTHO05D006850 2.4e-21 105.5 90 60.0
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 3.2e-21 105.1 91 59.3
MSTRG.15755 Avicennia marina HOM05D002293 ORTHO05D006850 4.2e-21 104.8 92 58.7
BolC5t29625H Brassica oleracea HOM05D002293 ORTHO05D006850 4.2e-21 104.8 91 60.4
CARHR010640 Cardamine hirsuta HOM05D002293 ORTHO05D006850 4.2e-21 104.8 92 59.8
PGSC0003DMG400030100 Solanum tuberosum HOM05D002293 ORTHO05D006850 4.2e-21 104.8 92 59.8
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 5.4e-21 104.4 94 56.4
Gorai.011G114300 Gossypium raimondii HOM05D002293 ORTHO05D006850 5.4e-21 104.4 92 58.7
Sp1g09130 Schrenkiella parvula HOM05D002293 ORTHO05D006850 5.4e-21 104.4 92 59.8
DCAR_011459 Daucus carota HOM05D002293 ORTHO05D006850 7.1e-21 104.0 77 64.9
ECA246G2776 Erigeron canadensis HOM05D002293 ORTHO05D006850 7.1e-21 104.0 86 60.5
Migut.H02444 Erythranthe guttata HOM05D002293 ORTHO05D006850 7.1e-21 104.0 94 57.4
Manes.13G076424 Manihot esculenta HOM05D002293 ORTHO05D006850 7.1e-21 104.0 91 59.3
Sc03g0004470 Simmondsia chinensis HOM05D002293 ORTHO05D006850 7.1e-21 104.0 90 60.0
TAR628G0759 Trochodendron aralioides HOM05D002293 ORTHO05D006850 7.1e-21 104.0 72 69.4
A06p07270 Brassica napus HOM05D002293 ORTHO05D006850 9.2e-21 103.6 89 60.7
C05p08790 Brassica napus HOM05D002293 ORTHO05D006850 9.2e-21 103.6 89 60.7
BraA06t23933Z Brassica rapa HOM05D002293 ORTHO05D006850 9.2e-21 103.6 89 60.7
CSS0045484 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 9.2e-21 103.6 91 59.3
Ca_17690_v3 Cicer arietinum L. HOM05D002293 ORTHO05D006850 9.2e-21 103.6 94 57.4
Cc07_g16420 Coffea canephora HOM05D002293 ORTHO05D006850 9.2e-21 103.6 75 66.7
Medtr8g092030 Medicago truncatula HOM05D002293 ORTHO05D006850 9.2e-21 103.6 79 64.6
TPR.G2175 Trifolium pratense HOM05D002293 ORTHO05D006850 9.2e-21 103.6 74 68.9
CSS0018890 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 1.2e-20 103.2 91 59.3
Ciclev10026609m.g Citrus clementina HOM05D002293 ORTHO05D006850 1.2e-20 103.2 91 58.2
Aa31LG1G4450 Aethionema arabicum HOM05D002293 ORTHO05D006850 2.1e-20 102.4 85 62.4
AL1G21300 Arabidopsis lyrata HOM05D002293 ORTHO05D006850 2.1e-20 102.4 92 59.8
Gohir.D10G104800 Gossypium hirsutum HOM05D002293 ORTHO05D006850 2.1e-20 102.4 92 57.6
Lj4g0027809 Lotus japonicus HOM05D002293 ORTHO05D006850 2.7e-20 102.1 94 55.3
THA.LOC104823665 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 2.7e-20 102.1 88 60.2
BcaC05g24873 Brassica carinata HOM05D002293 ORTHO05D006850 3.5e-20 101.7 74 66.2
BolC5t29624H Brassica oleracea HOM05D002293 ORTHO05D006850 3.5e-20 101.7 74 66.2
CARHR115310 Cardamine hirsuta HOM05D002293 ORTHO05D006850 3.5e-20 101.7 75 65.3
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 3.5e-20 101.7 88 59.1
Atru.chr4.430 Acer truncatum HOM05D002293 ORTHO05D006850 4.6e-20 101.3 74 66.2
Carub.0001s0993 Capsella rubella HOM05D002293 ORTHO05D006850 4.6e-20 101.3 90 57.8
Hma1.2p1_0375F.1_g138800 Hydrangea macrophylla HOM05D002293 ORTHO05D006850 4.6e-20 101.3 74 66.2
arahy.Tifrunner.gnm1.ann1.KS5C3R Arachis hypogaea HOM05D002293 ORTHO05D006850 6.0e-20 100.9 70 71.4
BcaC05g24931 Brassica carinata HOM05D002293 ORTHO05D006850 6.0e-20 100.9 89 58.4
Sabra05G0070300 Salix brachista HOM05D002293 ORTHO05D006850 6.0e-20 100.9 90 57.8
THA.LOC104816734 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 6.0e-20 100.9 92 57.6
Hund03525 Selenicereus undatus HOM05D002293 ORTHO05D006850 7.8e-20 100.5 84 59.5
CiPaw.03G133300 Carya illinoinensis HOM05D002293 ORTHO05D006850 1.0e-19 100.1 94 57.4
Lalb_Chr12g0203491 Lupinus albus HOM05D002293 ORTHO05D006850 1.0e-19 100.1 94 55.3
Psat7g050640 Pisum sativum HOM05D002293 ORTHO05D006850 1.0e-19 100.1 79 60.8
Potri.007G079600 Populus trichocarpa HOM05D002293 ORTHO05D006850 1.0e-19 100.1 90 56.7
Ah.03g141650 Amaranthus hybridus HOM05D002293 ORTHO05D006850 1.3e-19 99.8 89 57.3
HanXRQChr12g0379751 Helianthus annuus HOM05D002293 ORTHO05D006850 1.3e-19 99.8 79 64.6
C05p52480 Brassica napus HOM05D002293 ORTHO05D006850 1.7e-19 99.4 66 71.2
EL10Ac6g14773 Beta vulgaris HOM05D002293 ORTHO05D006850 2.3e-19 99.0 91 53.8
arahy.Tifrunner.gnm1.ann1.G7CS59 Arachis hypogaea HOM05D002293 ORTHO05D006850 3.0e-19 98.6 90 58.9
SGA_v2.0_scaffold47G17699 Striga asiatica HOM05D002293 ORTHO05D006850 3.0e-19 98.6 92 56.5
GSVIVG01022247001 Vitis vinifera HOM05D002293 ORTHO05D006850 3.0e-19 98.6 73 65.8
BcaC06g34278 Brassica carinata HOM05D002294 ORTHO05D002367 3.9e-19 98.2 66 69.7
unitig_899.g14611 Utricularia gibba HOM05D002293 ORTHO05D006850 3.9e-19 98.2 92 56.5
BolC7t43630H Brassica oleracea HOM05D002293 ORTHO05D006850 5.1e-19 97.8 66 69.7
AUR62003296 Chenopodium quinoa HOM05D002293 ORTHO05D006850 5.1e-19 97.8 90 56.7
AUR62027166 Chenopodium quinoa HOM05D002293 ORTHO05D006850 5.1e-19 97.8 91 56.0
CARHR053060 Cardamine hirsuta HOM05D002293 ORTHO05D006850 2.5e-18 95.5 85 56.5
CDE06G1065 Ceratophyllum demersum HOM05D002293 ORTHO05D006850 4.3e-18 94.7 73 60.3
PGR004G0821 Punica granatum HOM05D002293 ORTHO05D006850 7.3e-18 94.0 81 59.3
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 7.3e-18 94.0 91 53.8
RcHm_v2.0_Chr3g0477511 Rosa chinensis HOM05D002293 ORTHO05D006850 1.4e-16 89.7 53 83.0
HPP92_023991 Vanilla planifolia HOM05D002293 ORTHO05D006850 3.4e-15 85.1 65 63.1
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 7.6e-15 84.0 89 48.3
AagrBONN_evm.TU.Sc2ySwM_362.938 Anthoceros agrestis HOM05D000606 ORTHO05D001265 2.2e-14 82.4 91 46.2
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 2.2e-14 82.4 83 48.2
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 1.6e-12 76.3 88 43.2
Pp3c14_20400 Physcomitrium patens HOM05D002293 ORTHO05D006850 2.1e-12 75.9 76 47.4
CBR_g72684 Chara braunii HOM05D002293 ORTHO05D006850 8.7e-11 70.5 95 38.9
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 4.3e-10 68.2 42 73.8
BcaB03g15697 Brassica carinata HOM05D002293 ORTHO05D006850 5.6e-10 67.8 41 75.6
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 2.1e-09 65.9 42 73.8
BolC2t06175H Brassica oleracea HOM05D002293 ORTHO05D006850 5.3e-08 61.2 42 66.7
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 5.3e-08 61.2 91 39.6
Sabra07G0066800 Salix brachista HOM05D002293 ORTHO05D006850 2.6e-07 58.9 45 60.0


User provided reference genes

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