Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.7e-77 291.2 189 100.0
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 5.2e-62 241.5 190 87.9
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 3.7e-60 235.3 190 87.4
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 8.7e-41 171.0 204 67.2
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.2e-39 167.2 221 53.8
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.0e-37 159.8 195 54.4
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.4e-37 159.1 195 52.3
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 7.6e-37 157.9 192 57.8
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.1e-35 154.1 229 52.8
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.4e-35 153.7 204 61.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.3e-35 151.0 197 55.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.5e-34 149.1 128 63.3
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 7.8e-34 147.9 197 54.3
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.7e-33 146.7 136 59.6
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.3e-33 146.4 197 53.8
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.3e-33 146.4 194 53.1
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.0e-33 146.0 205 57.6
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 3.0e-33 146.0 206 58.3
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.0e-33 146.0 196 48.0
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.9e-33 145.6 136 55.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.1e-33 145.2 200 53.5
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.1e-33 145.2 206 50.0
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.6e-33 144.8 194 57.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 8.7e-33 144.4 125 60.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.7e-33 144.4 138 59.4
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.1e-32 144.1 200 56.5
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.1e-32 144.1 199 58.3
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.5e-32 142.9 208 58.2
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.5e-32 142.9 134 59.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 7.3e-32 141.4 127 59.8
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 7.3e-32 141.4 135 56.3
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.6e-31 140.2 197 55.8
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 3.6e-31 139.0 202 54.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 3.6e-31 139.0 128 55.5
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.6e-31 139.0 132 56.8
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 4.8e-31 138.7 127 59.1
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.1e-30 137.5 128 57.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.4e-30 137.1 128 59.4
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.8e-30 136.7 130 56.9
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.4e-30 136.3 201 45.8
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 3.1e-30 136.0 155 52.9
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.3e-30 135.2 131 58.0
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 9.0e-30 134.4 136 55.9
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.2e-29 134.0 127 59.1
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.5e-29 133.7 128 59.4
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.5e-29 133.7 136 55.9
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 2.0e-29 133.3 200 48.0
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.0e-29 133.3 125 58.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 4.5e-29 132.1 201 48.8
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 5.8e-29 131.7 197 41.1
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 9.9e-29 131.0 200 47.5
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.3e-28 130.6 197 45.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.3e-28 130.6 196 54.1
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.7e-28 130.2 198 52.5
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.2e-28 129.8 134 56.0
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.8e-28 129.0 133 57.1
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 3.8e-28 129.0 205 46.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 6.4e-28 128.3 136 55.1
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.4e-28 128.3 133 54.1
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 6.4e-28 128.3 130 56.2
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.4e-28 127.9 207 44.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.1e-27 127.5 133 53.4
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.2e-27 125.9 125 55.2
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.4e-27 125.2 196 46.9
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 9.3e-27 124.4 130 53.1
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 3.0e-25 119.4 128 55.5
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.0e-25 119.4 173 49.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.0e-25 119.4 109 60.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.1e-25 118.6 195 43.6
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 5.1e-25 118.6 128 53.1
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.1e-25 118.6 115 56.5
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.1e-25 118.6 191 52.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 5.1e-25 118.6 204 45.6
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 8.7e-25 117.9 109 57.8
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-24 117.5 132 50.8
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-24 117.5 193 47.2
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-24 117.1 192 48.4
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.9e-24 116.7 129 51.2
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.9e-24 116.7 193 48.2
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.6e-24 115.2 138 50.0
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.3e-23 114.0 124 52.4
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.6e-23 113.6 193 44.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.6e-23 113.6 129 51.2
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.8e-23 112.8 193 41.5
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.7e-23 112.5 130 53.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.7e-23 112.5 136 50.0
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.8e-23 112.1 198 53.5
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 6.2e-23 111.7 195 43.6
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 8.1e-23 111.3 131 51.9
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 8.1e-23 111.3 101 57.4
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 8.1e-23 111.3 198 45.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.1e-22 110.9 140 49.3
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-22 110.5 186 44.6
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-22 110.5 186 44.6
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.4e-22 110.5 186 44.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.4e-22 109.8 140 48.6
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 6.9e-22 108.2 203 49.3
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 9.0e-22 107.8 152 53.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.5e-21 107.1 197 47.2
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.5e-21 107.1 208 50.5
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.6e-21 106.3 111 55.0
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.4e-21 105.9 195 43.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.4e-21 105.9 136 48.5
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.4e-21 105.9 215 47.4
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 5.8e-21 105.1 136 50.7
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 5.8e-21 105.1 121 50.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 7.6e-21 104.8 207 46.4
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.3e-20 104.0 136 47.1
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.7e-20 103.6 115 53.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-20 103.6 115 53.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.7e-20 103.6 205 42.4
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.1e-19 100.9 87 59.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.9e-19 100.1 81 63.0
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.2e-19 99.0 122 49.2
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.2e-19 99.0 122 49.2
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 5.5e-19 98.6 118 50.0
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.5e-19 98.6 125 45.6
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 9.3e-19 97.8 85 60.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.6e-18 97.1 119 47.1
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.5e-18 95.9 74 63.5
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 6.0e-18 95.1 117 47.9
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 6.0e-18 95.1 117 47.9
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 6.0e-18 95.1 117 47.9
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 6.0e-18 95.1 129 48.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 7.9e-18 94.7 81 60.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.0e-17 94.4 72 63.9
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.8e-17 93.6 125 45.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 5.1e-17 92.0 77 59.7
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.5e-16 90.5 132 43.2
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.3e-16 89.4 146 57.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 3.3e-16 89.4 125 44.0
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 3.3e-16 89.4 125 44.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.1e-15 86.7 121 47.9
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 6.2e-15 85.1 145 55.9
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-14 84.3 246 37.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.4e-14 83.2 198 50.0
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.4e-14 83.2 156 44.9
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.3e-12 77.4 142 40.8
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.7e-12 77.0 59 61.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.7e-12 77.0 137 39.4
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.8e-12 75.9 120 43.3
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 4.9e-12 75.5 63 60.3
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.5e-12 75.1 63 55.6
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.9e-11 73.6 60 58.3
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.7e-10 69.7 116 39.7
FvH4_7g09300 Fragaria vesca HOM05D004771 ORTHO05D005565 4.6e-10 68.9 95 80.0
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.9e-09 65.9 50 64.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 6.7e-09 65.1 62 54.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.7e-08 62.0 55 54.5
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.2e-07 60.1 63 49.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.3e-07 58.5 50 56.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.1e-06 55.8 83 39.8


User provided reference genes

Program Settings