Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 2.8e-116 422.2 246 100.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 4.6e-103 378.3 246 89.8
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.1e-102 374.8 246 88.2
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.0e-101 372.9 246 89.4
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-101 372.5 246 89.0
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.4e-101 370.9 246 89.0
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 5.3e-83 311.6 221 77.8
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.3e-81 307.0 213 78.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.6e-66 256.9 223 65.0
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.0e-65 254.2 207 69.6
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.5e-64 250.4 223 64.6
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.6e-63 245.7 220 65.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.2e-62 241.9 212 65.6
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.2e-61 240.7 226 61.5
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.5e-61 240.4 217 63.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-61 240.0 216 64.8
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 6.4e-60 235.0 215 65.1
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 8.3e-60 234.6 217 65.4
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.1e-59 234.2 227 61.2
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.8e-59 233.4 218 61.5
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 7.0e-59 231.5 251 56.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 9.2e-59 231.1 225 63.6
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.2e-58 230.7 221 62.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.6e-58 230.3 231 62.3
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.5e-58 229.2 224 61.6
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.5e-58 229.2 217 61.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 5.9e-58 228.4 231 59.3
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.3e-57 227.3 205 62.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.7e-57 226.9 224 63.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-57 226.9 218 59.6
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.9e-57 225.7 206 62.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.6e-57 224.6 224 63.8
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.3e-56 222.6 223 59.2
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 9.5e-56 221.1 242 55.4
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.6e-55 220.3 215 61.4
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.1e-55 219.9 207 63.8
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.2e-55 218.4 195 63.6
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.0e-54 217.6 218 59.2
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.8e-54 216.9 213 62.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.8e-54 216.9 219 58.0
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-54 216.9 228 59.2
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.3e-54 216.5 204 62.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.0e-54 215.7 269 51.7
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 8.9e-54 214.5 210 60.5
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.9e-54 214.5 221 58.8
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.5e-53 213.8 195 62.6
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.4e-53 212.2 206 61.2
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.2e-52 209.9 223 56.5
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 8.3e-52 208.0 221 55.2
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.9e-51 206.8 253 51.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.4e-51 206.5 202 58.9
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.4e-51 205.3 218 54.1
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.6e-50 203.8 226 55.3
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.3e-49 200.7 205 63.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.3e-49 200.7 247 51.0
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.7e-49 200.3 202 58.4
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.7e-49 200.3 211 56.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.3e-49 199.9 257 49.4
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 3.9e-49 199.1 257 51.0
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.1e-48 197.6 149 71.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.5e-48 197.2 189 61.9
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.5e-48 196.4 264 50.8
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 3.3e-48 196.1 257 49.0
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 3.3e-48 196.1 172 64.5
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 4.3e-48 195.7 223 55.2
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.3e-48 195.7 224 56.2
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 7.3e-48 194.9 206 57.3
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 9.5e-48 194.5 229 52.0
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 9.5e-48 194.5 170 63.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.7e-47 192.2 221 54.3
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.2e-47 191.8 245 51.0
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.1e-46 189.5 258 49.6
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 5.2e-46 188.7 148 68.9
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 5.2e-46 188.7 216 53.7
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 6.8e-46 188.3 197 55.8
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 6.8e-46 188.3 210 55.2
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 8.9e-46 188.0 221 53.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.0e-45 186.8 248 51.2
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 3.4e-45 186.0 211 55.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.4e-45 186.0 227 52.0
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 5.8e-45 185.3 278 45.7
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 6.4e-44 181.8 227 50.2
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.3e-44 181.4 221 52.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 8.3e-44 181.4 203 54.2
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.4e-43 179.9 235 49.4
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 2.4e-43 179.9 228 49.6
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 7.1e-43 178.3 207 52.2
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.6e-42 177.2 222 49.5
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.6e-42 177.2 199 52.3
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.1e-42 176.8 211 50.7
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.6e-42 175.6 172 60.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.7e-41 173.7 200 52.5
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.3e-41 173.3 239 46.4
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 3.9e-41 172.6 205 51.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 9.5e-40 167.9 206 51.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 8.1e-39 164.9 149 60.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-38 162.5 213 47.9
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.8e-38 161.8 208 50.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.2e-37 161.0 176 55.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.5e-37 160.6 220 49.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 5.8e-37 158.7 189 51.9
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 7.6e-37 158.3 194 49.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-36 157.5 220 48.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.3e-36 157.5 220 48.6
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-36 156.8 219 48.9
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.9e-36 156.4 201 51.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.9e-36 156.4 234 46.6
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-35 154.5 223 46.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-35 154.5 216 45.8
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.9e-35 153.7 253 42.7
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 7.1e-35 151.8 213 46.0
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 4.6e-34 149.1 215 45.6
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 4.6e-34 149.1 225 44.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.3e-33 146.7 208 48.1
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.3e-33 146.7 245 41.2
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 1.1e-32 144.4 157 55.4
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 3.3e-32 142.9 226 42.9
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.1e-31 140.2 153 56.2
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 3.6e-31 139.4 205 44.4
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.8e-30 137.1 226 43.4
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 4.0e-30 136.0 151 53.0
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.2e-29 134.4 173 47.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.4e-29 132.9 195 47.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.4e-28 128.6 174 48.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 5.4e-27 125.6 234 39.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 9.3e-27 124.8 227 41.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.0e-25 119.8 141 52.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 5.1e-25 119.0 144 49.3
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.1e-24 117.9 223 37.2
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.1e-24 117.9 223 37.2
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.5e-24 116.7 202 43.1
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 5.6e-24 115.5 192 42.7
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 5.6e-24 115.5 192 42.7
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.8e-23 112.5 94 66.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 9.0e-22 108.2 183 42.6
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 3.4e-21 106.3 73 72.6
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-20 104.0 186 40.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-20 103.6 187 43.9
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-20 102.8 86 64.0
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.1e-19 101.3 193 40.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.1e-19 101.3 129 52.7
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 3.2e-19 99.8 158 43.0
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-18 97.4 186 38.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.3e-17 94.4 159 43.4
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.8e-17 94.0 141 45.4
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.5e-16 90.9 168 40.5
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 63 69.8
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 63 69.8
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 63 69.8
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 63 69.8
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.3e-15 87.8 129 44.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 60 71.7
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-15 87.0 58 72.4
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-15 86.7 56 76.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-15 86.3 56 76.8
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 8.1e-15 85.1 56 75.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.1e-14 83.2 187 36.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.4e-13 79.7 187 35.8
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.5e-13 79.3 94 47.9
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.9e-12 76.6 54 70.4
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.1e-11 74.7 51 70.6
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.9e-11 73.9 46 78.3
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-11 73.9 46 78.3
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 9.3e-11 71.6 189 30.2
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.7e-10 70.1 51 68.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-09 67.0 134 39.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.0e-09 66.6 88 50.0
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 5.6e-08 62.4 76 52.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-07 61.2 87 42.5
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.1e-06 58.2 36 77.8
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 1.4e-06 57.8 46 60.9
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 9.0e-06 55.1 133 33.8


User provided reference genes

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