Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0247051 Rosa chinensis HOM05D003604 ORTHO05D004110 8.1e-28 126.3 63 100.0
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 3.7e-20 100.9 48 100.0
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Dinv22327 Davidia involucrata HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 4.8e-20 100.5 48 97.9
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 4.8e-20 100.5 48 97.9
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Prupe.4G197400 Prunus persica HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
TAR626G0206 Trochodendron aralioides HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 4.8e-20 100.5 48 97.9
CiPaw.11G180300 Carya illinoinensis HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 6.3e-20 100.1 48 95.8
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 8.2e-20 99.8 48 93.8
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 95.8
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 95.8
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 93.8
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 95.8
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 95.8
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 1.1e-19 99.4 48 95.8
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 95.8
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 95.8
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 93.8
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 93.8
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 93.8
Gohir.D13G147400 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 93.8
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 93.8
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 1.4e-19 99.0 48 95.8
SalBow7G3912 Salvia bowleyana HOM05D003604 ORTHO05D004110 1.4e-19 99.0 52 88.5
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 1.8e-19 98.6 48 93.8
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 1.8e-19 98.6 48 93.8
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 1.8e-19 98.6 48 93.8
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 1.8e-19 98.6 48 93.8
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 1.8e-19 98.6 48 93.8
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 2.4e-19 98.2 48 93.8
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 2.4e-19 98.2 48 93.8
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 2.4e-19 98.2 48 93.8
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 93.8
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 93.8
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 95.8
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 91.7
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 91.7
PGSC0003DMG402014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 3.1e-19 97.8 48 91.7
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 93.8
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 89.6
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 91.7
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 93.8
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 95.8
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 91.7
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 91.7
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 4.1e-19 97.4 48 93.8
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 5.3e-19 97.1 48 93.8
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 5.3e-19 97.1 48 91.7
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 93.8
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 89.6
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
PGSC0003DMG400023083 Solanum tuberosum HOM05D003604 ORTHO05D004110 6.9e-19 96.7 48 91.7
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 9.0e-19 96.3 48 93.8
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 9.0e-19 96.3 48 93.8
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 9.0e-19 96.3 48 91.7
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 87.5
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 91.7
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 93.8
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 93.8
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 93.8
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 91.7
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 1.2e-18 95.9 48 93.8
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 1.5e-18 95.5 48 89.6
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.5e-18 95.5 52 86.5
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.5e-18 95.5 48 89.6
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 1.5e-18 95.5 48 91.7
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 2.0e-18 95.1 48 93.8
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 2.0e-18 95.1 48 89.6
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 2.0e-18 95.1 48 87.5
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 2.6e-18 94.7 48 89.6
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.6e-18 94.7 48 89.6
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 2.6e-18 94.7 48 89.6
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 3.4e-18 94.4 48 87.5
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 3.4e-18 94.4 48 87.5
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 3.4e-18 94.4 48 87.5
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 4.5e-18 94.0 48 91.7
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 5.9e-18 93.6 48 87.5
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 7.6e-18 93.2 48 87.5
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 1.3e-17 92.4 48 89.6
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 1.3e-17 92.4 48 85.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.3e-17 92.4 48 87.5
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 1.7e-17 92.0 48 85.4
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 2.2e-17 91.7 48 85.4
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 2.9e-17 91.3 48 89.6
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 2.9e-17 91.3 48 89.6
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.9e-17 91.3 48 89.6
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.9e-17 91.3 48 89.6
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 5.0e-17 90.5 48 83.3
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 6.5e-17 90.1 48 83.3
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 8.5e-17 89.7 48 85.4
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 2.5e-16 88.2 48 85.4
Sabra16G0281000 Salix brachista HOM05D003604 ORTHO05D004110 2.5e-16 88.2 48 83.3
AagrBONN_evm.TU.Sc2ySwM_362.2832 Anthoceros agrestis HOM05D003604 ORTHO05D004110 4.2e-16 87.4 48 81.2
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FvH4_2g07550 Fragaria vesca HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-15 84.3 48 83.3
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.3e-14 82.4 48 81.2
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 2.3e-14 81.6 48 72.9
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 2.3e-14 81.6 59 69.5
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 3.0e-14 81.3 48 77.1
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 7.4e-13 76.6 36 88.9
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 6.3e-12 73.6 36 91.7
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.6e-10 68.2 41 75.6
PRCOL_00001408 Prasinoderma coloniale HOM05D003604 ORTHO05D004110 2.2e-09 65.1 48 62.5
MCO04G471 Micromonas commoda HOM05D003604 ORTHO05D004110 5.0e-09 63.9 48 60.4
C02p37610 Brassica napus HOM05D003604 ORTHO05D004110 1.0e-06 56.2 28 85.7
CANSAT56G4280 Cannabis sativa HOM05D004957 ORTHO05D006741 3.0e-06 54.7 53 45.3
PGSC0003DMG400027352 Solanum tuberosum HOM05D004957 ORTHO05D006741 3.0e-06 54.7 53 43.4
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 3.9e-06 54.3 26 84.6
Migut.F00921 Erythranthe guttata HOM05D004957 ORTHO05D006741 3.9e-06 54.3 53 47.2
Sabra10G0180800 Salix brachista HOM05D004957 ORTHO05D006741 5.1e-06 53.9 53 45.3
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 6.7e-06 53.5 25 88.0
BolC5t33544H Brassica oleracea HOM05D003604 ORTHO05D004110 6.7e-06 53.5 25 88.0
Sopen11g003560 Solanum pennellii HOM05D004957 ORTHO05D006741 6.7e-06 53.5 53 41.5
MSTRG.27517 Avicennia marina HOM05D004957 ORTHO05D006741 8.8e-06 53.1 52 46.2


User provided reference genes

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