Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 6.5e-146 520.8 277 100.0
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 4.6e-115 418.3 274 85.0
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 2.1e-99 366.3 280 73.6
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-81 307.4 278 61.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-80 303.5 278 61.5
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-80 303.5 278 61.5
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.8e-80 302.0 278 61.5
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 6.9e-79 298.1 278 60.8
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 5.5e-68 261.9 276 55.8
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.6e-67 260.4 282 56.0
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.1e-65 254.2 279 55.9
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.3e-65 252.3 275 60.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 7.4e-65 251.5 284 55.6
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 7.4e-65 251.5 281 54.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.8e-64 248.8 268 55.6
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.1e-63 247.7 279 53.4
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.9e-63 245.0 278 52.9
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 9.0e-63 244.6 282 53.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.4e-62 242.7 278 51.8
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.9e-62 241.9 245 58.0
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.0e-61 241.1 279 54.8
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.3e-61 240.7 242 57.4
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.3e-61 240.7 279 58.4
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.7e-61 240.4 273 53.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 6.5e-61 238.4 277 53.4
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.1e-60 237.7 278 54.0
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.4e-60 237.3 273 52.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 5.5e-60 235.3 284 52.8
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-59 234.2 280 52.5
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.1e-59 233.4 274 57.7
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.1e-59 233.4 294 49.0
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 2.7e-59 233.0 233 60.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.6e-59 232.3 278 52.5
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 4.6e-59 232.3 277 53.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.0e-58 231.1 277 50.5
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 5.1e-58 228.8 282 51.4
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 6.7e-58 228.4 277 49.5
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 6.7e-58 228.4 139 84.9
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 6.7e-58 228.4 282 51.1
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.3e-57 226.1 250 55.2
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 3.3e-57 226.1 250 55.6
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.6e-56 223.8 291 50.9
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.1e-55 221.1 335 44.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.1e-55 221.1 307 46.9
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.4e-55 220.7 307 46.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 9.0e-55 218.0 227 59.0
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.0e-54 216.9 261 52.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.8e-53 212.6 262 50.8
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 5.0e-53 212.2 281 47.7
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-52 210.7 276 48.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-52 210.7 276 48.9
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 2.5e-52 209.9 243 53.9
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 4.2e-52 209.1 234 56.0
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 9.4e-52 208.0 273 50.2
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.1e-51 206.8 272 47.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.6e-51 206.1 272 55.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.1e-51 205.3 222 56.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 6.1e-51 205.3 229 59.8
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 6.1e-51 205.3 211 55.9
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 7.9e-51 204.9 254 51.6
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-50 204.1 272 53.7
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.9e-50 202.6 252 49.6
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-50 202.2 242 50.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 5.1e-50 202.2 246 51.6
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 6.7e-50 201.8 242 49.6
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 6.7e-50 201.8 236 54.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 8.8e-50 201.4 242 50.0
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.1e-49 201.1 242 50.0
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.1e-49 201.1 240 51.7
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.5e-49 200.7 244 50.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.0e-49 200.3 250 50.0
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 2.6e-49 199.9 278 46.0
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 4.3e-49 199.1 249 50.6
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.7e-49 198.7 251 50.2
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.7e-49 198.7 253 50.6
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 7.4e-49 198.4 255 50.6
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 9.7e-49 198.0 248 48.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 9.7e-49 198.0 267 47.2
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 9.7e-49 198.0 275 48.4
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.7e-48 197.2 259 49.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.2e-48 196.8 251 50.6
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-48 196.8 242 49.6
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.2e-48 196.8 241 51.0
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.8e-48 196.4 254 47.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.7e-48 196.1 242 49.2
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 4.8e-48 195.7 255 50.2
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 4.8e-48 195.7 242 49.2
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 4.8e-48 195.7 242 49.2
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 6.3e-48 195.3 280 46.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 6.3e-48 195.3 255 50.2
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-47 194.5 242 49.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-47 194.5 250 50.8
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.4e-47 194.1 250 50.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.8e-47 193.7 255 49.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-47 193.4 280 46.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.4e-47 193.4 249 48.2
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.4e-47 193.4 249 49.8
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.1e-47 193.0 251 49.0
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.3e-47 192.2 256 50.8
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 9.1e-47 191.4 254 48.8
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 9.1e-47 191.4 272 47.8
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-46 190.7 254 48.0
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.0e-46 190.3 286 45.1
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.4e-46 189.5 154 68.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.0e-45 188.0 249 49.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.8e-45 186.0 239 49.4
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 6.5e-45 185.3 244 48.0
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 8.5e-45 184.9 244 47.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 1.1e-44 184.5 278 43.9
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.1e-44 184.5 221 50.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 1.4e-44 184.1 245 52.7
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 2.5e-44 183.3 152 65.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.2e-44 181.8 278 45.0
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 7.2e-44 181.8 279 44.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 2.1e-43 180.3 250 46.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.7e-43 179.9 304 43.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 6.1e-43 178.7 242 45.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 7.9e-43 178.3 429 34.5
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.0e-42 177.9 250 45.2
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.0e-42 177.9 287 44.3
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.8e-42 177.2 307 39.4
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.3e-42 176.8 235 49.4
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-41 173.7 131 71.8
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-41 173.7 131 71.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 9.7e-41 171.4 243 44.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.2e-40 170.2 95 87.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 8.2e-40 168.3 129 70.5
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-38 163.3 133 66.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-38 163.3 133 66.2
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 4.5e-38 162.5 272 40.4
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.9e-36 157.1 241 44.0
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 7.2e-36 155.2 225 48.0
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-35 154.5 95 78.9
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.7e-32 142.9 222 42.3
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.1e-31 139.8 76 90.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.2e-28 129.8 162 44.4
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 2.7e-27 126.7 225 39.6
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.3e-26 123.6 185 49.7
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 8.8e-26 121.7 153 46.4
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 2.4e-23 113.6 64 85.9
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-21 107.5 210 37.6
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 4.7e-19 99.4 63 77.8
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.2e-17 94.7 92 55.4
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.4e-15 87.8 105 43.8
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 2.4e-15 87.0 50 84.0
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.1e-15 86.7 61 68.9
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.3e-13 80.5 88 52.3
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 5.0e-13 79.3 91 47.3
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 2.5e-12 77.0 181 33.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.2e-11 74.7 107 42.1
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.8e-10 70.9 34 94.1
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 3.0e-10 70.1 169 36.7
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 4.9e-08 62.8 130 39.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 6.4e-08 62.4 73 49.3
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.4e-08 62.4 67 52.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.1e-07 61.6 34 76.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.2e-07 60.1 50 60.0
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-06 58.2 90 42.2
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 3.5e-06 56.6 92 38.0


User provided reference genes

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