Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246361 Rosa chinensis HOM05D006483 ORTHO05D007837 1.1e-236 822.8 396 100.0
FAN24G1160 Fragaria x ananassa HOM05D006483 ORTHO05D007837 6.1e-214 747.3 398 91.0
FvH4_2g02550 Fragaria vesca HOM05D006483 ORTHO05D007837 2.0e-212 742.3 398 90.5
FAN20G1555 Fragaria x ananassa HOM05D006483 ORTHO05D007837 4.9e-211 737.6 394 90.4
FAN27G0654 Fragaria x ananassa HOM05D006483 ORTHO05D007837 6.1e-206 720.7 421 84.3
FAN15G2441 Fragaria x ananassa HOM05D006483 ORTHO05D007837 9.9e-188 660.2 323 94.7
Prupe.8G157100 Prunus persica HOM05D006483 ORTHO05D007837 9.9e-188 660.2 416 78.6
MD10G1115000 Malus domestica HOM05D006483 ORTHO05D007837 3.7e-187 658.3 401 79.6
Cfa004758 Carpinus fangiana HOM05D006483 ORTHO05D007837 6.8e-181 637.5 389 78.7
CiPaw.06G161800 Carya illinoinensis HOM05D006483 ORTHO05D007837 1.3e-179 633.3 390 78.7
Ciclev10030436m.g Citrus clementina HOM05D006483 ORTHO05D007837 2.9e-179 632.1 394 76.9
Duzib132G0719 Durio zibethinus HOM05D006483 ORTHO05D007837 1.9e-178 629.4 393 78.4
arahy.Tifrunner.gnm1.ann1.SKNB9F Arachis hypogaea HOM05D006483 ORTHO05D007837 7.1e-178 627.5 406 74.6
QL11p027690 Quercus lobata HOM05D006483 ORTHO05D007837 7.1e-178 627.5 392 77.8
Thecc.02G034600 Theobroma cacao HOM05D006483 ORTHO05D007837 9.2e-178 627.1 376 79.8
Glyma.15G061600 Glycine max HOM05D006483 ORTHO05D007837 2.1e-177 625.9 389 75.8
Cpa.g.sc20.69 Carica papaya HOM05D006483 ORTHO05D007837 1.3e-176 623.2 351 81.5
Lj1g0015418 Lotus japonicus HOM05D006483 ORTHO05D007837 3.0e-176 622.1 389 76.1
Gohir.D12G041300 Gossypium hirsutum HOM05D006483 ORTHO05D007837 1.1e-175 620.2 378 78.6
GSVIVG01036968001 Vitis vinifera HOM05D006483 ORTHO05D007837 1.5e-175 619.8 336 83.0
Dinv09500 Davidia involucrata HOM05D006483 ORTHO05D007837 3.3e-175 618.6 325 85.8
Psat1g212200 Pisum sativum HOM05D006483 ORTHO05D007837 3.3e-175 618.6 389 74.0
TWI59G1265 Tripterygium wilfordii HOM05D006483 ORTHO05D007837 3.3e-175 618.6 381 78.7
Gohir.A12G031000 Gossypium hirsutum HOM05D006483 ORTHO05D007837 7.3e-175 617.5 378 77.8
Gorai.008G043200 Gossypium raimondii HOM05D006483 ORTHO05D007837 1.2e-174 616.7 378 77.8
Phvul.006G198100 Phaseolus vulgaris HOM05D006483 ORTHO05D007837 1.2e-174 616.7 389 74.6
Manes.07G049300 Manihot esculenta HOM05D006483 ORTHO05D007837 1.6e-174 616.3 395 75.9
PGR142G2962 Punica granatum HOM05D006483 ORTHO05D007837 8.1e-174 614.0 385 76.1
Sabra16G0180000 Salix brachista HOM05D006483 ORTHO05D007837 8.1e-174 614.0 385 76.4
CsaV3_4G014600 Cucumis sativus L. HOM05D006483 ORTHO05D007837 1.4e-173 613.2 392 74.7
Nn6g34537 Nelumbo nucifera HOM05D006483 ORTHO05D007837 1.4e-173 613.2 393 74.6
Cc02_g20380 Coffea canephora HOM05D006483 ORTHO05D007837 1.8e-173 612.8 395 74.7
CiPaw.05G024900 Carya illinoinensis HOM05D006483 ORTHO05D007837 2.4e-173 612.5 323 86.4
vmacro01915 Vaccinium macrocarpon HOM05D006483 ORTHO05D007837 2.4e-173 612.5 379 77.6
ClCG10G009710 Citrullus lanatus HOM05D006483 ORTHO05D007837 5.2e-173 611.3 396 74.0
TAR376G0523 Trochodendron aralioides HOM05D006483 ORTHO05D007837 5.2e-173 611.3 388 75.8
VMungo0540G0518 Vigna mungo HOM05D006483 ORTHO05D007837 2.0e-172 609.4 389 74.0
Rhsim11G0146300 Rhododendron simsii HOM05D006483 ORTHO05D007837 2.6e-172 609.0 351 80.3
Ca_00195_v3 Cicer arietinum L. HOM05D006483 ORTHO05D007837 1.3e-171 606.7 386 74.4
CANSAT25G2975 Cannabis sativa HOM05D006483 ORTHO05D007837 2.2e-171 605.9 393 75.3
Duzib248G0339 Durio zibethinus HOM05D006483 ORTHO05D007837 2.2e-171 605.9 325 84.6
Potri.001G287700 Populus trichocarpa HOM05D006483 ORTHO05D007837 2.2e-171 605.9 397 74.3
Atru.chr5.2145 Acer truncatum HOM05D006483 ORTHO05D007837 2.9e-171 605.5 379 77.6
Lalb_Chr15g0090221 Lupinus albus HOM05D006483 ORTHO05D007837 4.9e-171 604.7 398 72.4
COL.COLO4_17833 Corchorus olitorius HOM05D006483 ORTHO05D007837 3.2e-170 602.1 347 81.0
Eucgr.I02515 Eucalyptus grandis HOM05D006483 ORTHO05D007837 3.2e-170 602.1 373 76.4
Lsat_1_v5_gn_5_110541 Lactuca sativa HOM05D006483 ORTHO05D007837 4.2e-170 601.7 397 72.8
Aa31LG8G12670 Aethionema arabicum HOM05D006483 ORTHO05D007837 7.1e-170 600.9 368 77.4
Sed0015964 Sechium edule HOM05D006483 ORTHO05D007837 9.3e-170 600.5 395 73.4
EL10Ac9g22152 Beta vulgaris HOM05D006483 ORTHO05D007837 2.7e-169 599.0 325 83.4
Thhalv10022723m.g Eutrema salsugineum HOM05D006483 ORTHO05D007837 4.6e-169 598.2 332 81.6
Medtr2g010480 Medicago truncatula HOM05D006483 ORTHO05D007837 7.8e-169 597.4 325 83.1
Sp3g27660 Schrenkiella parvula HOM05D006483 ORTHO05D007837 7.8e-169 597.4 385 74.5
Sc14g0002760 Simmondsia chinensis HOM05D006483 ORTHO05D007837 7.8e-169 597.4 379 76.0
Carub.0003s2843 Capsella rubella HOM05D006483 ORTHO05D007837 1.7e-168 596.3 386 73.8
Solyc11g044310.2 Solanum lycopersicum HOM05D006483 ORTHO05D007837 2.3e-168 595.9 384 72.7
Sopen11g019810 Solanum pennellii HOM05D006483 ORTHO05D007837 6.6e-168 594.3 384 72.4
CARHR105280 Cardamine hirsuta HOM05D006483 ORTHO05D007837 8.7e-168 594.0 323 83.6
CAN.G475.27 Capsicum annuum HOM05D006483 ORTHO05D007837 1.1e-167 593.6 377 73.7
AL3G45940 Arabidopsis lyrata HOM05D006483 ORTHO05D007837 3.3e-167 592.0 331 81.6
Aqoxy6G02925 Aquilegia oxysepala HOM05D006483 ORTHO05D007837 4.3e-167 591.7 372 75.8
BcaB08g34553 Brassica carinata HOM05D006483 ORTHO05D007837 7.3e-167 590.9 368 75.8
BcaC01g03099 Brassica carinata HOM05D006483 ORTHO05D007837 9.6e-167 590.5 324 82.1
BolC3t17891H Brassica oleracea HOM05D006483 ORTHO05D007837 9.6e-167 590.5 324 82.1
PSO541G5548 Papaver somniferum HOM05D006483 ORTHO05D007837 9.6e-167 590.5 320 81.9
THA.LOC104819515 Tarenaya hassleriana HOM05D006483 ORTHO05D007837 1.6e-166 589.7 398 72.6
BraA03t13652Z Brassica rapa HOM05D006483 ORTHO05D007837 2.8e-166 589.0 367 74.9
PSO675G7999 Papaver somniferum HOM05D006483 ORTHO05D007837 3.6e-166 588.6 375 73.1
A03p45170 Brassica napus HOM05D006483 ORTHO05D007837 4.8e-166 588.2 369 74.5
ECA234G3552 Erigeron canadensis HOM05D006483 ORTHO05D007837 4.8e-166 588.2 319 83.1
HanXRQChr10g0297661 Helianthus annuus HOM05D006483 ORTHO05D007837 1.4e-165 586.6 394 70.8
AT2G14260 Arabidopsis thaliana HOM05D006483 ORTHO05D007837 2.4e-165 585.9 313 84.7
CSS0046506 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 2.4e-165 585.9 360 76.9
Peaxi162Scf00152g00613 Petunia axillaris HOM05D006483 ORTHO05D007837 1.2e-164 583.6 352 76.7
Lj5C223T22 Lonicera japonica HOM05D006483 ORTHO05D007837 8.4e-163 577.4 362 76.8
DCAR_029840 Daucus carota HOM05D006483 ORTHO05D007837 1.9e-162 576.2 326 80.7
C03p56040 Brassica napus HOM05D006483 ORTHO05D007837 4.2e-162 575.1 353 75.4
SalBow6G1047 Salvia bowleyana HOM05D006483 ORTHO05D007837 9.3e-162 573.9 341 77.1
arahy.Tifrunner.gnm1.ann1.AKE21I Arachis hypogaea HOM05D006483 ORTHO05D007837 5.1e-160 568.2 406 69.5
Migut.B00501 Erythranthe guttata HOM05D006483 ORTHO05D007837 1.1e-159 567.0 378 70.4
ATR0739G015 Amborella trichopoda HOM05D006483 ORTHO05D007837 5.6e-159 564.7 317 80.8
SGA_v2.0_scaffold342G49421 Striga asiatica HOM05D006483 ORTHO05D007837 2.1e-158 562.8 391 69.1
MELO3C018038.2 Cucumis melo HOM05D006483 ORTHO05D007837 5.8e-156 554.7 423 66.9
unitig_21.g20708 Utricularia gibba HOM05D006483 ORTHO05D007837 9.9e-156 553.9 325 76.6
CSS0033600 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 2.2e-155 552.7 349 75.6
TAR628G0755 Trochodendron aralioides HOM05D006483 ORTHO05D007837 2.1e-153 546.2 297 81.5
HPP92_006303 Vanilla planifolia HOM05D006483 ORTHO05D007837 5.6e-151 538.1 325 75.4
CDE02G1970 Ceratophyllum demersum HOM05D006483 ORTHO05D007837 7.4e-151 537.7 332 74.1
MSTRG.16655 Avicennia marina HOM05D006483 ORTHO05D007837 2.4e-149 532.7 293 80.5
Zm00001eb292750 Zea mays HOM05D006483 ORTHO05D007837 8.7e-144 514.2 287 78.4
AUR62027055 Chenopodium quinoa HOM05D006483 ORTHO05D007837 2.5e-143 512.7 320 74.4
Pp3c4_27270 Physcomitrium patens HOM05D006483 ORTHO05D007837 9.7e-143 510.8 308 72.7
SMO145G0068 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 1.3e-142 510.4 311 72.0
AagrBONN_evm.TU.Sc2ySwM_344.4362 Anthoceros agrestis HOM05D006483 ORTHO05D007837 1.6e-142 510.0 321 68.8
Haze_10356 Corylus avellana HOM05D006483 ORTHO05D007837 1.1e-141 507.3 637 47.6
Mapoly0001s0344 Marchantia polymorpha HOM05D006483 ORTHO05D007837 4.1e-141 505.4 313 70.9
CBR_g8564 Chara braunii HOM05D006483 ORTHO05D007837 4.7e-129 465.3 315 67.0
Os05g0513900 Oryza sativa ssp. japonica HOM05D006483 ORTHO05D007837 6.7e-120 434.9 243 80.2
Ah.01g024350 Amaranthus hybridus HOM05D006483 ORTHO05D007837 2.9e-107 392.9 270 69.3
Nitab4.5_0007517g0010 Nicotiana tabacum HOM05D006483 ORTHO05D007837 1.2e-105 387.5 270 70.0
AUR62030898 Chenopodium quinoa HOM05D006483 ORTHO05D007837 1.4e-101 374.0 278 64.7
Actinidia00335 Actinidia chinensis HOM05D006483 ORTHO05D007837 4.7e-97 359.0 227 75.8
Mapoly0142s0028 Marchantia polymorpha HOM05D006483 ORTHO05D007837 7.8e-92 341.7 352 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1401 Anthoceros agrestis HOM05D006483 ORTHO05D007837 1.9e-85 320.5 350 43.4
SMO353G0285 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 1.9e-82 310.5 314 46.2
SMO364G0301 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 1.9e-82 310.5 313 46.0
MBI16_g27214_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 5.8e-71 272.3 161 75.8
MBI16_g41225_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 3.5e-60 236.5 170 66.5
PRCOL_00002897 Prasinoderma coloniale HOM05D006483 ORTHO05D007837 4.8e-57 226.1 334 40.1
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 1.8e-56 224.2 122 79.5
Zm00001eb142680 Zea mays HOM05D006483 ORTHO05D007837 1.3e-54 218.0 186 55.9
MD05G1112500 Malus domestica HOM05D006483 ORTHO05D007837 7.3e-50 202.2 204 53.9
EL10Ac8g19599 Beta vulgaris HOM05D006483 ORTHO05D007837 9.6e-50 201.8 134 72.4
Cre08.g375600 Chlamydomonas reinhardtii HOM05D006483 ORTHO05D007837 3.6e-49 199.9 196 48.0
Oeu007495.1 Olea europaea HOM05D006483 ORTHO05D007837 1.3e-30 138.3 81 71.6
MD05G1112400 Malus domestica HOM05D006483 ORTHO05D007837 1.1e-24 118.6 70 75.7
SEGI_05070 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 2.0e-15 87.8 79 49.4
TPR.G27616 Trifolium pratense HOM05D006483 ORTHO05D007837 1.8e-11 74.7 38 78.9
arahy.Tifrunner.gnm1.ann1.W5BQ9H Arachis hypogaea HOM05D006483 ORTHO05D000252 2.3e-11 74.3 62 58.1
SEGI_04316 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 5.7e-10 69.7 34 82.4
Migut.M01182 Erythranthe guttata HOM05D000363 ORTHO05D000236 1.5e-07 61.6 152 28.9
ClCG01G022790 Citrullus lanatus HOM05D000363 ORTHO05D000236 4.5e-07 60.1 126 29.4
Zm00001eb049690 Zea mays HOM05D003600 ORTHO05D004129 7.7e-07 59.3 106 34.0
Cpa.g.sc1028.5 Carica papaya HOM05D000363 ORTHO05D000236 1.7e-06 58.2 126 29.4
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 5.0e-06 56.6 121 32.2
Sed0026331 Sechium edule HOM05D000363 ORTHO05D000236 5.0e-06 56.6 134 28.4


User provided reference genes

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