Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246231 Rosa chinensis HOM05D007472 ORTHO05D009477 2.2e-100 369.0 190 100.0
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 1.5e-64 250.0 179 69.3
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 4.9e-60 235.0 177 67.2
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 6.4e-60 234.6 181 65.2
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 5.4e-59 231.5 179 65.9
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 7.1e-59 231.1 181 64.6
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 2.4e-51 206.1 179 57.5
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 9.3e-51 204.1 183 61.2
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 4.3e-48 195.3 175 57.7
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 2.8e-47 192.6 161 60.2
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 3.6e-47 192.2 161 59.6
FAN14G2920 Fragaria x ananassa HOM05D007472 ORTHO05D009477 3.1e-46 189.1 163 61.3
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 3.4e-45 185.7 186 50.0
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 7.6e-45 184.5 162 58.0
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 9.9e-45 184.1 162 58.0
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 1.9e-43 179.9 164 59.1
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 2.5e-40 169.5 128 61.7
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 2.1e-39 166.4 166 49.4
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 1.5e-37 160.2 175 46.3
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 5.8e-37 158.3 157 49.7
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 2.2e-36 156.4 182 44.0
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 1.5e-32 143.7 186 43.0
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 1.9e-32 143.3 157 45.2
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 1.9e-32 143.3 171 43.9
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 1.9e-32 143.3 157 45.2
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 1.9e-32 143.3 171 43.9
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 1.9e-32 143.3 164 48.8
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 2.5e-32 142.9 163 44.8
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 2.5e-32 142.9 183 39.3
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 4.3e-32 142.1 182 42.3
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 7.4e-32 141.4 154 47.4
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 3.7e-31 139.0 164 43.3
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 3.7e-31 139.0 164 43.3
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 8.2e-31 137.9 164 44.5
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 1.4e-30 137.1 162 42.6
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 1.4e-30 137.1 164 42.7
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 1.2e-29 134.0 166 39.2
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 3.4e-29 132.5 202 36.6
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 6.5e-28 128.3 166 44.0
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 1.3e-25 120.6 203 36.0
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 1.3e-25 120.6 172 40.1
Aqoxy1G01920 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 1.1e-24 117.5 175 41.1
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 5.7e-24 115.2 186 37.6
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 1.4e-22 110.5 133 44.4
AT3G28875 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 3.1e-22 109.4 129 42.6
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 6.9e-22 108.2 85 58.8
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 6.9e-22 108.2 162 39.5
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 8.5e-20 101.3 164 35.4
Aqoxy1G01780 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 2.5e-19 99.8 149 38.3
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 4.6e-18 95.5 161 37.3
AUR62034397 Chenopodium quinoa HOM05D007472 ORTHO05D009477 9.7e-16 87.8 105 44.8
Atru.chr8.142 Acer truncatum HOM05D007472 ORTHO05D009477 1.4e-11 73.9 68 51.5
Mapoly0003s0158 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.7e-10 69.7 122 34.4
Duzib147G0661 Durio zibethinus HOM05D007472 ORTHO05D009477 3.6e-10 69.3 96 44.8
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 5.1e-09 65.5 188 29.3
CBR_g32589 Chara braunii HOM05D007472 ORTHO05D009477 2.2e-07 60.1 137 32.8
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 2.8e-07 59.7 129 34.1
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 8.2e-07 58.2 201 28.4
Atru.chr8.141 Acer truncatum HOM05D007472 ORTHO05D009477 9.1e-06 54.7 110 36.4


User provided reference genes

Program Settings