Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246081 Rosa chinensis HOM05D005556 ORTHO05D006304 7.7e-58 226.9 109 100.0
FAN24G1262 Fragaria x ananassa HOM05D005556 ORTHO05D006304 6.6e-17 90.9 62 72.6
Atru.BG.46.p Acer truncatum HOM05D005556 ORTHO05D006304 8.6e-17 90.5 62 72.6
FAN27G0195 Fragaria x ananassa HOM05D005556 ORTHO05D006304 8.6e-17 90.5 62 72.6
RcHm_v2.0_Chr6g0246091 Rosa chinensis HOM05D005556 ORTHO05D006304 1.1e-16 90.1 62 72.6
FAN20G2516 Fragaria x ananassa HOM05D005556 ORTHO05D006304 2.5e-16 89.0 61 72.1
FAN15G0833 Fragaria x ananassa HOM05D005556 ORTHO05D006304 3.3e-16 88.6 62 71.0
Prupe.8G157600 Prunus persica HOM05D005556 ORTHO05D006304 4.3e-16 88.2 62 71.0
Gohir.A12G031200 Gossypium hirsutum HOM05D005556 ORTHO05D006304 5.6e-16 87.8 60 71.7
Gohir.D12G041100 Gossypium hirsutum HOM05D005556 ORTHO05D006304 5.6e-16 87.8 60 71.7
Gorai.008G042900 Gossypium raimondii HOM05D005556 ORTHO05D006304 5.6e-16 87.8 60 71.7
Cfa004765 Carpinus fangiana HOM05D005556 ORTHO05D006304 7.3e-16 87.4 62 69.4
QL11p027090 Quercus lobata HOM05D005556 ORTHO05D006304 7.3e-16 87.4 62 69.4
COL.COLO4_17842 Corchorus olitorius HOM05D005556 ORTHO05D006304 9.5e-16 87.0 60 71.7
Lalb_Chr09g0327041 Lupinus albus HOM05D005556 ORTHO05D006304 9.5e-16 87.0 62 69.4
CSS0007132 Camellia sinensis var. sinensis HOM05D005556 ORTHO05D006304 1.2e-15 86.7 62 69.4
CSS0048948 Camellia sinensis var. sinensis HOM05D005556 ORTHO05D006304 1.2e-15 86.7 62 69.4
Rhsim11G0145300 Rhododendron simsii HOM05D005556 ORTHO05D006304 1.2e-15 86.7 66 63.6
Actinidia02420 Actinidia chinensis HOM05D005556 ORTHO05D006304 2.1e-15 85.9 62 67.7
Ciclev10028842m.g Citrus clementina HOM05D005556 ORTHO05D006304 2.1e-15 85.9 62 69.4
Haze_10362 Corylus avellana HOM05D005556 ORTHO05D006304 2.1e-15 85.9 61 68.9
Duzib132G0943 Durio zibethinus HOM05D005556 ORTHO05D006304 2.1e-15 85.9 61 70.5
TWI23G1245 Tripterygium wilfordii HOM05D005556 ORTHO05D006304 2.1e-15 85.9 62 66.1
vmacro01911 Vaccinium macrocarpon HOM05D005556 ORTHO05D006304 2.1e-15 85.9 84 54.8
Eucgr.G01120 Eucalyptus grandis HOM05D005556 ORTHO05D006304 2.8e-15 85.5 62 66.1
Potri.009G081300 Populus trichocarpa HOM05D005556 ORTHO05D006304 2.8e-15 85.5 62 66.1
Thecc.02G035400 Theobroma cacao HOM05D005556 ORTHO05D006304 2.8e-15 85.5 60 70.0
GSVIVG01036958001 Vitis vinifera HOM05D005556 ORTHO05D006304 2.8e-15 85.5 62 67.7
CiPaw.06G161400 Carya illinoinensis HOM05D005556 ORTHO05D006304 3.6e-15 85.1 62 67.7
Cpa.g.sc20.62 Carica papaya HOM05D005556 ORTHO05D006304 4.7e-15 84.7 62 67.7
Dinv09497 Davidia involucrata HOM05D005556 ORTHO05D006304 4.7e-15 84.7 62 66.1
Potri.001G287100 Populus trichocarpa HOM05D005556 ORTHO05D006304 6.1e-15 84.3 62 66.1
Lj5A224G46 Lonicera japonica HOM05D005556 ORTHO05D006304 8.0e-15 84.0 62 66.1
vmacro05715 Vaccinium macrocarpon HOM05D005556 ORTHO05D006304 8.0e-15 84.0 66 66.7
ClCG02G007540 Citrullus lanatus HOM05D005556 ORTHO05D006304 1.0e-14 83.6 62 64.5
Aqoxy6G00609 Aquilegia oxysepala HOM05D005556 ORTHO05D006304 1.8e-14 82.8 61 65.6
Sabra16G0179600 Salix brachista HOM05D005556 ORTHO05D006304 1.8e-14 82.8 62 64.5
DCAR_021917 Daucus carota HOM05D005556 ORTHO05D006304 2.3e-14 82.4 62 64.5
Migut.B00506 Erythranthe guttata HOM05D005556 ORTHO05D006304 2.3e-14 82.4 62 61.3
MD05G1113100 Malus domestica HOM05D005556 ORTHO05D006304 3.0e-14 82.0 62 64.5
TAR628G0311 Trochodendron aralioides HOM05D005556 ORTHO05D006304 4.0e-14 81.6 62 62.9
PSO210G4879 Papaver somniferum HOM05D005556 ORTHO05D006304 6.8e-14 80.9 63 61.9
PSO761G0683 Papaver somniferum HOM05D005556 ORTHO05D006304 6.8e-14 80.9 63 61.9
PGR042G0433 Punica granatum HOM05D005556 ORTHO05D006304 6.8e-14 80.9 62 61.3
Hma1.2p1_0435F.1_g152480 Hydrangea macrophylla HOM05D005556 ORTHO05D006304 8.9e-14 80.5 62 62.9
Hma1.2p1_0435F.1_g152490 Hydrangea macrophylla HOM05D005556 ORTHO05D006304 8.9e-14 80.5 62 62.9
Nn5g29135 Nelumbo nucifera HOM05D005556 ORTHO05D006304 8.9e-14 80.5 62 62.9
Cc02_g20430 Coffea canephora HOM05D005556 ORTHO05D006304 1.2e-13 80.1 62 62.9
Manes.07G048500 Manihot esculenta HOM05D005556 ORTHO05D006304 1.2e-13 80.1 62 61.3
CsaV3_7G007220 Cucumis sativus L. HOM05D005556 ORTHO05D006304 1.5e-13 79.7 62 62.9
SGA_v2.0_scaffold342G49419 Striga asiatica HOM05D005556 ORTHO05D006304 1.5e-13 79.7 62 62.9
CANSAT25G0859 Cannabis sativa HOM05D005556 ORTHO05D006304 2.0e-13 79.3 62 64.5
AUR62013157 Chenopodium quinoa HOM05D005556 ORTHO05D006304 2.0e-13 79.3 65 58.5
AUR62030906 Chenopodium quinoa HOM05D005556 ORTHO05D006304 2.0e-13 79.3 65 58.5
Medtr4g092750 Medicago truncatula HOM05D005556 ORTHO05D006304 2.0e-13 79.3 62 61.3
SEGI_28357 Sequoiadendron giganteum HOM05D005556 ORTHO05D006304 2.0e-13 79.3 62 61.3
AUR62027065 Chenopodium quinoa HOM05D005556 ORTHO05D006304 2.6e-13 79.0 65 58.5
HPP92_007724 Vanilla planifolia HOM05D005556 ORTHO05D006304 2.6e-13 79.0 62 61.3
Oeu059877.1 Olea europaea HOM05D005556 ORTHO05D006304 3.4e-13 78.6 62 59.7
Psat7g103600 Pisum sativum HOM05D005556 ORTHO05D006304 3.4e-13 78.6 65 58.5
SHI04909 Sapria himalayana HOM05D005556 ORTHO05D006304 3.4e-13 78.6 62 59.7
TPR.G16873 Trifolium pratense HOM05D005556 ORTHO05D006304 3.4e-13 78.6 62 61.3
Ah.01g024290 Amaranthus hybridus HOM05D005556 ORTHO05D006304 4.4e-13 78.2 62 59.7
ECA240G4430 Erigeron canadensis HOM05D005556 ORTHO05D006304 4.4e-13 78.2 70 55.7
MBI16_g35805_MAGBIO Magnolia biondii HOM05D005556 ORTHO05D006304 4.4e-13 78.2 62 59.7
MELO3C018576.2 Cucumis melo HOM05D005556 ORTHO05D006304 5.8e-13 77.8 62 59.7
HanXRQChr09g0250811 Helianthus annuus HOM05D005556 ORTHO05D006304 5.8e-13 77.8 62 59.7
arahy.Tifrunner.gnm1.ann1.ASR1GR Arachis hypogaea HOM05D005556 ORTHO05D006304 7.5e-13 77.4 62 61.3
arahy.Tifrunner.gnm1.ann1.GBZ5J5 Arachis hypogaea HOM05D005556 ORTHO05D006304 7.5e-13 77.4 62 61.3
Lj4g0008817 Lotus japonicus HOM05D005556 ORTHO05D006304 7.5e-13 77.4 62 61.3
Phvul.002G216600 Phaseolus vulgaris HOM05D005556 ORTHO05D006304 1.3e-12 76.6 61 60.7
Glyma.08G064100 Glycine max HOM05D005556 ORTHO05D006304 1.7e-12 76.3 62 61.3
Sc08g0004230 Simmondsia chinensis HOM05D005556 ORTHO05D006304 1.7e-12 76.3 62 59.7
THA.LOC104807192 Tarenaya hassleriana HOM05D005556 ORTHO05D006304 1.7e-12 76.3 62 58.1
unitig_21.g20707 Utricularia gibba HOM05D005556 ORTHO05D006304 2.2e-12 75.9 62 58.1
MSTRG.16652 Avicennia marina HOM05D005556 ORTHO05D006304 2.9e-12 75.5 62 58.1
Carub.0007s0675 Capsella rubella HOM05D005556 ORTHO05D006304 2.9e-12 75.5 62 56.5
Hund06487 Selenicereus undatus HOM05D005556 ORTHO05D006304 2.9e-12 75.5 62 58.1
EL10Ac9g22141 Beta vulgaris HOM05D005556 ORTHO05D006304 3.7e-12 75.1 65 56.9
Thhalv10025723m.g Eutrema salsugineum HOM05D005556 ORTHO05D006304 3.7e-12 75.1 62 56.5
VMungo0251G3662 Vigna mungo HOM05D005556 ORTHO05D006304 6.4e-12 74.3 61 59.0
CARHR241760 Cardamine hirsuta HOM05D005556 ORTHO05D006304 1.1e-11 73.6 62 56.5
Sp7g31400 Schrenkiella parvula HOM05D005556 ORTHO05D006304 1.1e-11 73.6 62 54.8
COL.COLO4_17843 Corchorus olitorius HOM05D005556 ORTHO05D006304 1.4e-11 73.2 64 60.9
Lsat_1_v5_gn_9_114260 Lactuca sativa HOM05D005556 ORTHO05D006304 1.9e-11 72.8 62 56.5
Aa31sc730G30 Aethionema arabicum HOM05D005556 ORTHO05D006304 2.4e-11 72.4 62 54.8
BcaB03g12782 Brassica carinata HOM05D005556 ORTHO05D006304 3.2e-11 72.0 70 50.0
Ca_18422_v3 Cicer arietinum L. HOM05D005556 ORTHO05D006304 3.2e-11 72.0 62 54.8
ATR0767G112 Amborella trichopoda HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 56.5
AL7G17810 Arabidopsis lyrata HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 54.8
C03p86470 Brassica napus HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 53.2
C07p59820 Brassica napus HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 54.8
BolC3t20939H Brassica oleracea HOM05D002023 ORTHO05D002049 4.1e-11 71.6 62 53.2
BolC7t46427H Brassica oleracea HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 54.8
BraA03t15255Z Brassica rapa HOM05D005556 ORTHO05D006304 4.1e-11 71.6 62 54.8
AT4G33670 Arabidopsis thaliana HOM05D005556 ORTHO05D006304 5.4e-11 71.2 62 54.8
BcaNung02190 Brassica carinata HOM05D005556 ORTHO05D006304 5.4e-11 71.2 62 54.8
A08p17470 Brassica napus HOM05D005556 ORTHO05D006304 5.4e-11 71.2 70 50.0
BraA08t33702Z Brassica rapa HOM05D002023 ORTHO05D002049 5.4e-11 71.2 70 50.0
A03p62160 Brassica napus HOM05D005556 ORTHO05D006304 9.2e-11 70.5 62 53.2
Zm00001eb408730 Zea mays HOM05D005556 ORTHO05D006304 1.2e-10 70.1 62 54.8
CDE04G2170 Ceratophyllum demersum HOM05D005556 ORTHO05D006304 1.6e-10 69.7 62 53.2
Nitab4.5_0001477g0210 Nicotiana tabacum HOM05D005556 ORTHO05D006304 1.6e-10 69.7 62 54.8
Nitab4.5_0012619g0020 Nicotiana tabacum HOM05D005556 ORTHO05D006304 1.6e-10 69.7 62 54.8
Thhalv10026635m.g Eutrema salsugineum HOM05D005556 ORTHO05D006304 2.0e-10 69.3 62 53.2
Solyc01g106450.3 Solanum lycopersicum HOM05D005556 ORTHO05D006304 2.7e-10 68.9 62 54.8
PGSC0003DMG400003102 Solanum tuberosum HOM05D005556 ORTHO05D006304 2.7e-10 68.9 62 54.8
CAN.G504.63 Capsicum annuum HOM05D005556 ORTHO05D006304 3.5e-10 68.6 62 54.8
Os12g0482700 Oryza sativa ssp. japonica HOM05D005556 ORTHO05D006304 4.6e-10 68.2 62 54.8
Sopen01g048820 Solanum pennellii HOM05D005556 ORTHO05D006304 1.0e-09 67.0 62 53.2
AagrBONN_evm.TU.Sc2ySwM_228.863 Anthoceros agrestis HOM05D005556 ORTHO05D006304 2.3e-09 65.9 62 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3957 Anthoceros agrestis HOM05D005556 ORTHO05D006304 5.0e-09 64.7 62 50.0
Mapoly0002s0285 Marchantia polymorpha HOM05D005556 ORTHO05D006304 6.6e-09 64.3 60 51.7
vmacro20270 Vaccinium macrocarpon HOM05D005556 ORTHO05D006304 6.6e-09 64.3 51 62.7
Ca_18437_v3 Cicer arietinum L. HOM05D005556 ORTHO05D006304 5.6e-08 61.2 79 43.0
SMO164G0219 Selaginella moellendorffii HOM05D005556 ORTHO05D006304 5.6e-08 61.2 62 48.4
SMO164G0102 Selaginella moellendorffii HOM05D005556 ORTHO05D006304 9.5e-08 60.5 62 45.2
Manes.10G090900 Manihot esculenta HOM05D005556 ORTHO05D006304 1.2e-07 60.1 43 58.1
Pp3c7_4940 Physcomitrium patens HOM05D005556 ORTHO05D006304 1.8e-06 56.2 60 46.7


User provided reference genes

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