Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245801 Rosa chinensis HOM05D001083 ORTHO05D026514 1.8e-40 168.7 81 100.0
RcHm_v2.0_Chr5g0052031 Rosa chinensis HOM05D001083 ORTHO05D026514 4.3e-29 131.0 61 100.0
RcHm_v2.0_Chr7g0237271 Rosa chinensis HOM05D001083 ORTHO05D026514 6.8e-27 123.6 62 93.5
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 3.4e-26 121.3 60 95.0
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 3.4e-26 121.3 60 95.0
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 7.5e-26 120.2 60 93.3
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.5e-26 120.2 60 93.3
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.5e-26 120.2 60 93.3
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.5e-26 120.2 60 93.3
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.5e-26 120.2 60 93.3
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 9.8e-26 119.8 60 91.7
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 9.8e-26 119.8 60 93.3
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 1.7e-25 119.0 62 87.1
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 1.7e-25 119.0 60 91.7
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 2.9e-25 118.2 60 90.0
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 3.7e-25 117.9 60 90.0
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 88.3
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 3.7e-25 117.9 60 90.0
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 3.7e-25 117.9 60 90.0
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 88.3
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 90.0
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 90.0
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 86.7
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 86.7
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 86.7
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 90.0
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 86.7
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 90.0
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 4.9e-25 117.5 60 86.7
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 6.4e-25 117.1 60 88.3
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 6.4e-25 117.1 60 86.7
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 6.4e-25 117.1 60 88.3
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 88.3
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 88.3
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 90.0
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 86.7
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 86.7
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 86.7
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 85.0
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 88.3
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 86.7
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 8.3e-25 116.7 60 86.7
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 86.7
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 86.7
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 86.7
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 88.3
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 88.3
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 86.7
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 86.7
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 88.3
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 88.3
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 1.1e-24 116.3 60 88.3
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 88.3
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 88.3
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 86.7
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 91.7
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 85.0
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 86.7
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 1.4e-24 115.9 60 86.7
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 86.7
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 86.7
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 86.7
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 85.0
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 86.7
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.8e-24 115.5 60 86.7
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 86.7
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 86.7
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 86.7
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 86.7
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 88.3
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 85.0
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 2.4e-24 115.2 60 86.7
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 3.2e-24 114.8 60 85.0
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 3.2e-24 114.8 60 85.0
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 3.2e-24 114.8 60 83.3
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 4.1e-24 114.4 59 88.1
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 4.1e-24 114.4 60 86.7
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 4.1e-24 114.4 60 88.3
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 5.4e-24 114.0 60 83.3
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 5.4e-24 114.0 60 83.3
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 5.4e-24 114.0 60 86.7
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 5.4e-24 114.0 60 85.0
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 5.4e-24 114.0 60 85.0
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 5.4e-24 114.0 61 85.2
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 85.0
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 85.0
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 85.0
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 86.7
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 83.3
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 7.0e-24 113.6 60 83.3
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 83.3
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 85.0
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 86.7
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 9.2e-24 113.2 60 85.0
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.6e-23 112.5 60 83.3
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.6e-23 112.5 60 83.3
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.6e-23 112.5 60 83.3
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.6e-23 112.5 60 83.3
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 2.0e-23 112.1 60 85.0
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 2.0e-23 112.1 60 86.7
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 2.7e-23 111.7 58 86.2
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 3.5e-23 111.3 60 86.7
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 3.5e-23 111.3 60 81.7
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 4.6e-23 110.9 60 81.7
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 4.6e-23 110.9 60 83.3
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 4.6e-23 110.9 60 83.3
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 4.6e-23 110.9 60 83.3
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 4.6e-23 110.9 60 83.3
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 5.9e-23 110.5 60 85.0
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 7.8e-23 110.2 60 81.7
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.0e-22 109.8 60 83.3
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.0e-22 109.8 60 83.3
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 1.0e-22 109.8 60 83.3
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 1.3e-22 109.4 61 83.6
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.7e-22 109.0 60 83.3
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.7e-22 109.0 60 78.3
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 2.3e-22 108.6 60 81.7
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 3.0e-22 108.2 60 83.3
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 8.6e-22 106.7 60 83.3
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 3.1e-19 98.2 61 72.1
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.7e-17 92.4 60 73.3
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 6.4e-17 90.5 60 73.3
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 9.5e-13 76.6 60 68.3
CSS0001719 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D112825 8.1e-12 73.6 45 73.3
Ah.16g104380 Amaranthus hybridus HOM05D001083 ORTHO05D026514 8.3e-09 63.5 39 74.4
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 2.7e-07 58.5 34 79.4
Lsat_1_v5_gn_2_125261 Lactuca sativa HOM05D001083 ORTHO05D230751 6.6e-06 53.9 38 65.8


User provided reference genes

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