Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 9.7e-147 523.5 266 100.0
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 8.5e-135 483.8 266 90.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.5e-134 482.3 266 90.2
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.9e-132 474.9 266 89.5
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.2e-126 455.3 266 86.1
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 8.0e-125 450.7 266 84.6
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.0e-116 422.2 266 79.3
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 4.0e-116 421.8 266 80.8
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 2.0e-115 419.5 266 79.3
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.4e-115 418.7 266 78.9
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.4e-115 418.3 264 78.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 5.7e-115 417.9 266 78.2
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.3e-114 416.8 266 78.6
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 2.2e-114 416.0 266 78.9
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 2.8e-114 415.6 266 76.7
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.8e-114 414.8 267 76.8
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.4e-113 413.3 266 76.3
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.4e-113 413.3 266 78.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.8e-113 412.9 267 79.8
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 4.5e-112 408.3 265 77.0
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.5e-112 408.3 266 76.7
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.9e-112 407.9 266 78.6
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.7e-111 406.4 266 75.6
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 8.5e-111 404.1 303 70.6
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 8.5e-111 404.1 268 74.3
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.2e-110 402.1 266 75.2
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 7.2e-110 401.0 267 75.3
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 4.7e-109 398.3 266 77.1
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.0e-108 397.1 267 74.9
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 5.2e-108 394.8 265 75.8
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.5e-107 393.3 255 76.1
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.0e-107 392.9 266 73.3
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.7e-107 391.3 268 73.1
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 2.2e-106 389.4 266 73.3
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.8e-106 389.0 249 78.3
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 8.3e-106 387.5 268 74.3
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.1e-105 387.1 266 74.1
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.4e-105 386.7 264 74.6
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.4e-105 386.7 266 73.3
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 2.4e-105 386.0 246 76.0
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.1e-105 385.6 265 72.8
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 4.1e-105 385.2 252 77.0
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 7.0e-105 384.4 266 71.4
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 7.0e-105 384.4 267 72.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 9.2e-105 384.0 259 74.5
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 9.2e-105 384.0 267 71.9
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.5e-104 382.1 267 71.2
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.7e-103 379.8 262 74.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.3e-103 379.4 266 72.2
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 2.3e-103 379.4 229 80.8
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.9e-103 379.0 245 77.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 3.8e-103 378.6 264 70.5
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 6.6e-103 377.9 255 73.3
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 8.6e-103 377.5 266 70.3
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.1e-102 377.1 267 71.2
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 2.5e-102 375.9 264 70.8
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 3.3e-102 375.6 264 72.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 9.5e-102 374.0 265 70.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.2e-101 373.6 286 67.1
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.8e-101 372.5 252 73.0
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 2.8e-101 372.5 252 72.2
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.8e-101 372.5 270 69.3
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.7e-101 371.7 269 71.7
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 4.7e-101 371.7 265 73.2
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.4e-100 370.2 237 77.6
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-100 370.2 282 68.1
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.0e-100 369.0 264 71.2
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.0e-100 368.6 267 68.5
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 5.2e-100 368.2 250 73.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 6.8e-100 367.9 266 71.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.5e-99 366.7 243 74.5
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.0e-99 366.3 267 68.5
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.4e-99 365.5 275 70.9
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 4.4e-99 365.2 268 68.3
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 4.4e-99 365.2 267 69.7
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.7e-99 364.8 267 68.5
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 9.8e-99 364.0 266 68.8
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.7e-98 363.2 240 77.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.7e-98 362.1 248 75.0
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 6.4e-98 361.3 246 70.7
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 8.3e-98 360.9 235 75.7
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.1e-97 360.5 350 56.3
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.1e-97 360.5 266 70.7
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.4e-97 360.1 234 76.9
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-97 359.8 262 68.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 7.0e-97 357.8 265 67.5
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 267 67.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 9.2e-97 357.5 230 78.3
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 9.2e-97 357.5 267 67.4
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.2e-96 357.1 234 76.5
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.2e-96 357.1 250 72.4
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.0e-95 354.0 266 65.8
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.0e-95 354.0 243 72.8
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.3e-95 353.6 264 70.1
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.3e-95 353.6 245 72.2
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 3.0e-95 352.4 301 61.8
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 3.0e-95 352.4 213 79.8
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 6.6e-95 351.3 254 66.5
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.5e-94 350.1 267 65.9
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.5e-94 349.4 254 66.9
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-93 347.1 266 65.8
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-93 347.1 219 76.7
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.6e-93 346.7 266 64.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.6e-93 346.7 266 65.8
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 3.6e-93 345.5 267 64.4
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.6e-93 345.5 337 58.8
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 4.7e-93 345.1 279 63.1
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 6.2e-93 344.7 267 64.4
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 6.2e-93 344.7 280 62.5
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 6.2e-93 344.7 247 68.0
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 8.0e-93 344.4 267 64.4
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.1e-92 344.0 247 66.0
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-92 343.6 267 64.0
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.8e-92 343.2 267 63.7
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.3e-92 342.8 247 67.6
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 3.1e-92 342.4 221 77.4
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 4.0e-92 342.0 250 70.4
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.2e-92 341.7 213 78.4
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.6e-91 339.3 213 77.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 9.8e-91 337.4 263 65.4
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.6e-88 330.1 249 65.1
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 6.0e-88 328.2 212 75.9
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.0e-87 325.9 266 66.9
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 5.6e-86 321.6 255 61.6
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.2e-85 318.2 253 67.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 6.2e-85 318.2 263 64.3
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.8e-84 314.7 266 64.3
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 1.3e-82 310.5 267 60.3
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 3.7e-82 308.9 266 62.4
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 4.9e-82 308.5 204 73.0
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 4.9e-82 308.5 241 62.2
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.1e-81 305.4 245 60.0
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 4.6e-80 302.0 201 76.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.4e-76 289.7 206 69.9
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.8e-76 288.1 305 52.5
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.7e-74 283.5 184 77.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.7e-74 283.5 198 76.3
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.9e-74 282.0 243 59.7
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 9.2e-73 277.7 244 58.6
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 6.6e-71 271.6 200 67.0
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.6e-69 266.9 252 54.4
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.4e-68 263.1 234 58.1
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 4.9e-66 255.4 242 55.0
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-65 254.2 256 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.4e-65 253.1 249 52.6
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 9.3e-65 251.1 201 62.7
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 5.3e-60 235.3 139 79.9
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.2e-58 229.9 146 79.5
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.6e-56 222.2 207 60.4
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.5e-54 217.2 243 47.3
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.3e-53 214.2 234 47.9
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.5e-51 205.7 194 57.7
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.8e-45 185.7 166 60.8
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.8e-42 176.0 104 77.9
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.8e-42 176.0 122 74.6
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 2.5e-38 163.3 103 78.6
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.3e-38 162.5 96 85.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.1e-36 157.9 146 60.3
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 8.8e-31 138.3 99 75.8
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 7.4e-30 135.2 237 39.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 5.3e-28 129.0 118 57.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 5.3e-28 129.0 118 57.6
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 5.5e-25 119.0 177 41.8
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.7e-24 116.7 141 50.4
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.0e-23 114.8 82 70.7
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 8.2e-21 105.1 165 39.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 3.1e-20 103.2 66 66.7
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.8e-18 96.3 90 57.8
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.2e-17 92.0 68 66.2
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 2.7e-16 90.1 308 27.6
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.3e-15 87.0 64 68.8
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.2e-09 65.5 61 49.2
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.1e-08 63.9 123 39.8
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 2.0e-06 57.4 206 24.3
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.6e-06 57.0 35 80.0


User provided reference genes

Program Settings