Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 9.3e-107 390.2 194 100.0
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 3.7e-39 165.6 84 95.2
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 1.1e-38 164.1 84 94.0
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 6.2e-26 121.7 117 59.8
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 1.4e-25 120.6 81 70.4
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 8.9e-25 117.9 117 57.3
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 8.9e-25 117.9 117 57.3
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 8.9e-25 117.9 117 57.3
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 8.9e-25 117.9 81 69.1
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-24 117.1 77 72.7
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-24 117.1 77 72.7
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 1.5e-24 117.1 90 66.7
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 1.5e-24 117.1 81 69.1
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 2.0e-24 116.7 81 67.9
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 2.0e-24 116.7 81 67.9
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 3.4e-24 115.9 77 71.4
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 3.4e-24 115.9 84 66.7
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 4.4e-24 115.5 129 52.7
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 5.8e-24 115.2 106 57.5
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 5.8e-24 115.2 83 67.5
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 7.6e-24 114.8 94 63.8
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 7.6e-24 114.8 117 56.4
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 7.6e-24 114.8 77 70.1
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.6e-24 114.8 126 52.4
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.6e-24 114.8 126 52.4
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 7.6e-24 114.8 126 52.4
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 7.6e-24 114.8 77 70.1
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 7.6e-24 114.8 77 70.1
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.3e-23 114.0 77 68.8
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.3e-23 114.0 77 68.8
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.3e-23 114.0 94 63.8
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 1.3e-23 114.0 82 65.9
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.7e-23 113.6 77 70.1
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 2.2e-23 113.2 124 52.4
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 2.2e-23 113.2 93 63.4
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 2.2e-23 113.2 88 63.6
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 2.9e-23 112.8 114 56.1
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 2.9e-23 112.8 94 62.8
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 2.9e-23 112.8 77 70.1
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.9e-23 112.8 116 54.3
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 3.8e-23 112.5 77 70.1
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 3.8e-23 112.5 85 65.9
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.8e-23 112.5 113 55.8
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 4.9e-23 112.1 81 66.7
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 4.9e-23 112.1 80 70.0
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 6.4e-23 111.7 77 70.1
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 6.4e-23 111.7 77 70.1
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 68.8
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 68.8
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 68.8
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 68.8
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 68.8
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 8.4e-23 111.3 77 67.5
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 1.1e-22 110.9 85 64.7
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.1e-22 110.9 117 53.8
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 1.1e-22 110.9 78 69.2
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 1.1e-22 110.9 105 58.1
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.4e-22 110.5 77 67.5
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.4e-22 110.5 105 56.2
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.9e-22 110.2 106 55.7
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.9e-22 110.2 102 56.9
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.9e-22 110.2 102 56.9
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 1.9e-22 110.2 77 70.1
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 2.4e-22 109.8 85 64.7
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 2.4e-22 109.8 85 64.7
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 2.4e-22 109.8 85 64.7
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 2.4e-22 109.8 80 67.5
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 2.4e-22 109.8 80 67.5
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 2.4e-22 109.8 83 66.3
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 3.2e-22 109.4 77 66.2
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.2e-22 109.4 105 57.1
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 3.2e-22 109.4 82 67.1
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 4.1e-22 109.0 77 66.2
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 4.1e-22 109.0 77 66.2
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 4.1e-22 109.0 77 67.5
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 4.1e-22 109.0 77 66.2
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 4.1e-22 109.0 83 66.3
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 5.4e-22 108.6 112 55.4
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 7.1e-22 108.2 137 48.2
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 9.2e-22 107.8 81 65.4
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 9.2e-22 107.8 81 65.4
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 9.2e-22 107.8 76 67.1
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 1.2e-21 107.5 77 66.2
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.6e-21 107.1 102 54.9
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.6e-21 107.1 80 65.0
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.6e-21 107.1 106 55.7
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.6e-21 107.1 106 55.7
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 2.1e-21 106.7 111 54.1
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 2.1e-21 106.7 117 53.0
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 2.1e-21 106.7 78 69.2
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 2.7e-21 106.3 111 54.1
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 2.7e-21 106.3 78 66.7
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 3.5e-21 105.9 141 48.9
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 3.5e-21 105.9 133 51.9
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 4.6e-21 105.5 77 68.8
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 4.6e-21 105.5 102 55.9
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 4.6e-21 105.5 112 56.2
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 6.0e-21 105.1 79 67.1
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 6.0e-21 105.1 71 71.8
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 6.0e-21 105.1 74 68.9
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 6.0e-21 105.1 104 55.8
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 7.8e-21 104.8 99 55.6
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.8e-21 104.8 78 62.8
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 7.8e-21 104.8 78 66.7
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 7.8e-21 104.8 78 62.8
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 7.8e-21 104.8 75 69.3
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 1.0e-20 104.4 89 60.7
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 1.0e-20 104.4 126 50.8
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 1.0e-20 104.4 138 49.3
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 1.0e-20 104.4 112 52.7
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.3e-20 104.0 75 68.0
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 1.7e-20 103.6 105 58.1
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 2.3e-20 103.2 105 58.1
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 2.3e-20 103.2 105 58.1
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 2.3e-20 103.2 105 58.1
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.3e-20 103.2 75 68.0
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 3.0e-20 102.8 71 69.0
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 6.6e-20 101.7 120 51.7
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 1.1e-19 100.9 105 57.1
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 1.5e-19 100.5 109 54.1
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.9e-19 100.1 109 53.2
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.9e-19 100.1 71 69.0
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 1.9e-19 100.1 71 69.0
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 1.9e-19 100.1 71 69.0
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 5.6e-19 98.6 65 72.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 5.6e-19 98.6 70 67.1
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 5.6e-19 98.6 76 63.2
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 5.6e-19 98.6 108 53.7
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 5.6e-19 98.6 76 65.8
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 5.6e-19 98.6 76 63.2
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 7.3e-19 98.2 110 53.6
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 7.3e-19 98.2 108 53.7
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 9.6e-19 97.8 74 64.9
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.6e-18 97.1 101 54.5
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.1e-18 96.7 76 63.2
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 4.7e-18 95.5 141 44.0
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 6.2e-18 95.1 69 66.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 3.1e-17 92.8 75 58.7
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 5.2e-17 92.0 77 61.0
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.3e-15 87.4 81 55.6
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 2.2e-15 86.7 77 54.5
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.2e-15 86.7 79 54.4
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 2.9e-15 86.3 75 53.3
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.2e-14 82.4 62 62.9
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.6e-13 80.5 62 61.3
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.1e-13 80.1 93 49.5
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.0e-12 77.8 71 53.5
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 1.3e-12 77.4 90 46.7
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.3e-12 77.4 91 49.5
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.3e-12 77.4 62 59.7
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.3e-12 77.4 62 59.7
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 1.7e-12 77.0 101 43.6
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.3e-12 76.6 95 49.5
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 1.5e-11 73.9 79 44.3
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.9e-11 73.6 72 55.6
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.3e-11 72.8 72 55.6
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.3e-11 72.8 62 56.5
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 4.3e-11 72.4 108 40.7
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 5.6e-11 72.0 125 43.2
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 9.6e-11 71.2 49 67.3
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 9.6e-11 71.2 63 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 6.2e-10 68.6 64 54.7
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.1e-09 67.8 65 52.3
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 2.0e-08 63.5 47 59.6
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 9.9e-08 61.2 59 47.5
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 5.4e-06 55.5 40 62.5


User provided reference genes

Program Settings