Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 2550.4 1295 100.0
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 2003.4 2123 56.8
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1744.9 2084 52.1
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1734.9 2084 51.9
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1664.4 1988 51.7
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1624.0 2027 50.9
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1375.1 2133 43.2
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1250.0 1504 52.0
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1141.7 1992 40.9
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1080.5 2062 37.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 5.3e-307 1058.1 2135 36.3
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 3.4e-298 1028.9 2145 35.5
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 3.8e-297 1025.4 756 73.7
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 5.0e-281 971.8 1897 36.0
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 1.5e-280 970.3 2077 34.4
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 6.8e-278 961.4 2081 33.8
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 1.9e-264 916.8 2077 32.7
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 6.4e-260 901.7 2032 32.5
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 2.4e-259 899.8 2128 32.5
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 1.6e-258 897.1 2069 33.1
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 1.1e-254 884.4 1880 34.1
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 1.6e-250 870.5 2054 32.2
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 1.3e-249 867.5 2137 31.9
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 2.3e-249 866.7 2123 32.5
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 7.3e-248 861.7 851 56.8
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.6e-245 853.2 714 65.8
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 7.6e-237 825.1 2096 31.2
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.4e-235 820.8 2102 31.2
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 7.8e-234 815.1 2051 31.1
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 6.9e-230 802.0 2054 30.9
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 9.0e-230 801.6 2052 30.8
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-225 788.1 516 80.0
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 3.3e-224 783.1 2127 30.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 3.1e-222 776.5 2129 29.7
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 1.3e-220 771.2 2094 29.7
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 2.1e-218 763.8 2088 30.1
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 2.3e-217 760.4 1659 34.8
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 5.6e-216 755.7 2060 29.8
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 1.6e-215 754.2 2014 30.5
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 3.7e-215 753.1 2107 29.5
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 2.4e-214 750.4 2075 29.7
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.1e-211 741.5 2063 29.3
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 5.5e-211 739.2 2083 29.0
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 2.1e-210 737.3 2063 29.2
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 1.9e-208 730.7 2094 28.8
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 1.3e-204 718.0 2018 29.4
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 2.9e-204 716.8 2062 29.1
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 4.3e-200 703.0 2057 28.9
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 3.6e-194 683.3 1777 31.0
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 1.7e-191 674.5 2022 28.2
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 1.1e-187 661.8 862 46.1
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 5.5e-187 659.4 1946 28.7
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.5e-184 651.4 1925 28.9
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 2.0e-184 651.0 2032 28.2
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.7e-183 647.9 2059 28.0
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 3.7e-183 646.7 1994 28.1
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 3.7e-183 646.7 1952 28.8
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.9e-180 637.1 2054 27.9
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 3.8e-180 636.7 2088 28.2
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 8.5e-180 635.6 1921 28.4
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 6.1e-178 629.4 1998 27.6
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.1e-174 618.6 1937 29.0
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 1.2e-173 615.1 2002 27.6
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 1.7e-172 611.3 1994 28.3
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.9e-172 610.5 2122 26.7
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 8.8e-169 599.0 1979 27.7
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 5.7e-168 596.3 1948 27.9
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 5.7e-168 596.3 2077 26.8
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 3.1e-166 590.5 1995 27.9
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 2.0e-165 587.8 1961 28.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 4.5e-165 586.6 2077 26.8
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 3.8e-164 583.6 2026 26.9
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 5.0e-164 583.2 1951 27.4
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 6.5e-164 582.8 1945 27.6
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 6.5e-164 582.8 1945 27.6
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 4.2e-163 580.1 2087 26.6
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.5e-160 571.6 1951 27.1
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.6e-157 561.6 1938 27.2
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 8.6e-156 555.8 2001 26.4
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 2.1e-154 551.2 2056 26.0
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 5.2e-153 546.6 2071 26.5
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 5.2e-153 546.6 826 40.7
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 1.8e-150 538.1 2061 25.9
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 1.7e-148 531.6 2103 25.6
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 8.6e-148 529.3 641 51.5
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 1.0e-145 522.3 2015 26.1
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 8.3e-143 512.7 1959 26.1
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 2.7e-141 507.7 1969 25.5
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 3.6e-138 497.3 2004 25.9
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 4.1e-134 483.8 2005 25.9
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.9e-131 474.9 2030 25.7
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 6.4e-111 406.8 2140 23.3
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 6.4e-111 406.8 832 34.0
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.1e-110 406.0 836 33.5
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 6.0e-109 400.2 290 75.9
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 1.1e-102 379.4 942 31.2
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 2.7e-101 374.8 627 38.6
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 4.3e-99 367.5 1959 22.2
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-98 365.9 456 51.5
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 1.0e-92 346.3 626 37.4
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 2.3e-92 345.1 210 85.7
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 8.2e-90 336.7 831 30.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 5.7e-83 313.9 1925 22.6
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 1.5e-75 289.3 165 90.9
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 1.7e-74 285.8 171 79.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.7e-71 275.8 557 31.4
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.6e-67 261.9 677 31.5
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 5.2e-60 237.7 300 48.0
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 1.6e-56 226.1 317 45.7
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 5.4e-49 201.1 140 77.1
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 9.1e-49 200.3 389 36.2
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 5.0e-47 194.5 398 31.9
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 1.0e-44 186.8 375 34.7
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.8e-42 178.7 522 30.7
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 8.6e-39 167.2 148 62.8
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.1e-38 166.8 721 25.9
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.9e-38 166.0 368 29.9
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 4.7e-37 161.4 234 43.2
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 2.2e-34 152.5 472 31.1
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 7.0e-33 147.5 114 62.3
RcHm_v2.0_Chr6g0244931 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-31 143.7 96 75.0
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 6.6e-31 141.0 105 70.5
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 5.6e-30 137.9 772 22.5
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 1.2e-29 136.7 113 59.3
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-29 136.7 87 80.5
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 1.8e-28 132.9 104 60.6
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 4.1e-25 121.7 90 62.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 4.1e-25 121.7 90 62.2
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 5.4e-25 121.3 172 37.8
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 2.0e-24 119.4 93 60.2
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 4.6e-24 118.2 203 35.5
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 6.0e-24 117.9 88 61.4
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.3e-23 115.9 118 47.5
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 2.5e-22 112.5 112 52.7
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 6.8e-20 104.4 83 61.4
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-16 93.2 65 72.3
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 2.7e-16 92.4 343 25.9
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 7.8e-16 90.9 122 45.1
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 4.3e-14 85.1 136 40.4
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 9.5e-14 84.0 55 65.5
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 1.4e-12 80.1 51 66.7
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 6.0e-08 64.7 35 85.7
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 4.3e-06 58.5 84 42.9


User provided reference genes

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