Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 5.1e-232 807.4 403 100.0
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 4.1e-205 718.0 401 90.0
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 1.7e-203 712.6 401 89.8
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 4.8e-190 667.9 401 83.8
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 1.8e-189 666.0 401 84.0
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.8e-189 666.0 401 84.0
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 4.1e-189 664.8 401 83.5
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.7e-182 642.9 401 81.3
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 9.8e-143 510.8 434 62.0
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 5.0e-139 498.4 430 60.5
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 2.6e-103 379.8 434 50.7
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 4.6e-100 369.0 441 49.7
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 2.5e-98 363.2 227 83.7
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 3.2e-93 346.3 438 48.2
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 6.9e-88 328.6 437 45.5
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 2.9e-86 323.2 435 43.4
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 2.9e-86 323.2 440 43.9
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 4.6e-84 315.8 433 44.8
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.3e-83 313.5 432 45.4
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 5.1e-83 312.4 426 44.1
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 3.3e-82 309.7 439 41.9
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 1.8e-80 303.9 437 42.6
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 3.4e-79 299.7 431 41.8
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 1.4e-77 294.3 432 41.7
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 1.2e-76 291.2 433 40.6
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 3.6e-76 289.7 431 41.3
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.7e-73 280.8 426 41.3
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 5.3e-72 275.8 453 40.6
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 9.1e-72 275.0 428 40.0
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 2.6e-71 273.5 420 39.3
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 7.7e-71 271.9 428 40.7
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.1e-69 268.1 437 37.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 1.4e-69 267.7 433 37.9
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 4.2e-69 266.2 439 37.8
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 4.2e-69 266.2 432 38.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 9.4e-69 265.0 438 38.4
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.6e-68 264.2 439 37.8
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 2.7e-68 263.5 442 37.8
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 6.1e-68 262.3 225 61.3
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 7.4e-66 255.4 430 38.6
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 2.8e-65 253.4 435 37.0
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.1e-64 251.5 416 37.3
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 4.1e-64 249.6 432 36.6
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 7.0e-64 248.8 421 40.6
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 3.5e-63 246.5 436 36.7
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 4.5e-63 246.1 408 37.3
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 7.7e-63 245.4 413 36.8
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 3.8e-62 243.0 410 37.8
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 5.5e-61 239.2 418 35.6
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 1.6e-60 237.7 413 40.0
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.8e-59 234.2 421 35.2
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 1.8e-59 234.2 418 38.5
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 2.3e-59 233.8 426 36.4
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 1.2e-58 231.5 414 36.7
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 4.4e-58 229.6 413 37.0
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 1.3e-57 228.0 414 37.2
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 1.7e-57 227.6 409 40.1
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 2.8e-57 226.9 413 37.5
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 2.8e-57 226.9 412 36.2
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.1e-56 224.9 418 36.1
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 3.1e-56 223.4 408 37.0
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 3.1e-56 223.4 409 39.1
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 7.0e-56 222.2 406 38.9
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 2.7e-55 220.3 405 34.8
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 1.3e-54 218.0 414 32.4
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 1.7e-54 217.6 413 34.4
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 5.0e-54 216.1 424 34.7
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 6.5e-54 215.7 405 33.3
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.9e-53 214.2 248 46.4
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 4.2e-53 213.0 410 38.8
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 5.5e-53 212.6 393 35.1
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 9.4e-53 211.8 405 34.1
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 1.2e-52 211.5 420 35.0
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 1.6e-52 211.1 412 35.2
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 1.0e-51 208.4 399 34.3
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 1.0e-51 208.4 413 35.8
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 1.4e-51 208.0 403 35.5
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 3.0e-51 206.8 402 35.3
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 5.2e-51 206.1 399 34.1
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 1.5e-50 204.5 403 33.5
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.3e-49 201.4 398 35.9
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 2.3e-46 190.7 399 31.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 5.0e-46 189.5 418 30.6
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 2.8e-44 183.7 445 31.7
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 4.0e-43 179.9 427 31.9
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 2.0e-42 177.6 400 31.2
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 7.5e-42 175.6 399 33.6
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 9.8e-42 175.3 388 31.2
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 2.8e-41 173.7 400 30.8
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 2.8e-41 173.7 400 30.8
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 6.3e-41 172.6 296 38.9
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 7.0e-40 169.1 427 29.7
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 9.2e-40 168.7 402 29.9
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 3.5e-39 166.8 400 29.5
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 2.3e-38 164.1 399 32.3
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 6.6e-38 162.5 425 30.4
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 3.3e-37 160.2 374 31.3
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 3.4e-34 150.2 220 40.0
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 8.0e-28 129.0 154 44.2
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 9.2e-24 115.5 84 71.4
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.7e-22 111.3 141 44.0
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 5.2e-19 99.8 140 42.9
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 2.4e-08 64.3 174 27.0
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 9.2e-08 62.4 292 25.7


User provided reference genes

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