Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1489.6 741 100.0
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1316.6 800 85.6
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1208.4 800 79.5
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1206.4 800 79.4
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1206.0 800 79.5
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1102.0 727 79.9
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1084.7 714 80.0
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 5.2e-299 1030.8 756 73.7
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.1e-280 969.9 798 68.0
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 1.9e-277 959.1 804 65.3
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 4.9e-273 944.5 809 64.2
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-270 936.8 516 92.1
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 1.5e-221 773.5 813 53.9
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 1.4e-219 766.9 813 53.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 2.0e-218 763.1 793 54.2
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.2e-212 743.0 814 52.8
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 2.9e-209 732.6 804 53.1
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 7.2e-208 728.0 781 51.9
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 1.8e-206 723.4 781 52.2
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 1.5e-197 693.7 807 48.8
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 6.3e-196 688.3 827 49.5
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 2.4e-195 686.4 807 50.4
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 1.6e-186 657.1 771 49.2
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 5.9e-186 655.2 779 48.5
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 1.7e-185 653.7 765 48.8
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.1e-184 651.0 782 48.7
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 1.6e-183 647.1 818 46.9
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 2.6e-181 639.8 795 47.5
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 4.4e-181 639.0 755 47.8
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 2.2e-180 636.7 769 47.9
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 2.8e-175 619.8 768 46.6
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 3.6e-175 619.4 770 47.3
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 8.0e-175 618.2 797 45.2
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 1.0e-174 617.8 792 45.7
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 1.0e-174 617.8 812 45.1
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 3.4e-173 612.8 813 44.8
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 5.8e-173 612.1 775 45.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 7.5e-173 611.7 812 45.7
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 6.4e-172 608.6 795 44.8
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 6.4e-172 608.6 775 45.0
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 8.3e-172 608.2 813 44.5
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 6.0e-170 602.1 814 44.6
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 1.1e-168 597.8 773 46.2
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 5.6e-168 595.5 773 45.0
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 5.6e-168 595.5 800 44.9
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 8.1e-167 591.7 803 44.8
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 5.1e-161 572.4 813 43.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 5.2e-158 562.4 775 43.5
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 6.8e-158 562.0 799 43.7
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 3.9e-153 546.2 761 43.8
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 5.6e-152 542.3 755 43.2
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 2.1e-151 540.4 813 41.9
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 2.8e-151 540.0 780 42.1
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 1.8e-150 537.3 759 43.1
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.8e-150 537.3 751 42.9
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.6e-149 533.5 782 42.7
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 1.1e-147 528.1 753 43.4
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 9.3e-147 525.0 755 43.0
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 2.7e-146 523.5 760 42.5
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 1.9e-144 517.3 759 42.0
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 2.8e-143 513.5 800 40.5
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 9.0e-142 508.4 837 40.1
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 2.6e-141 506.9 774 42.4
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.7e-140 504.2 791 40.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 2.2e-140 503.8 801 40.6
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 2.9e-140 503.4 776 41.6
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 2.7e-138 496.9 800 41.0
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 1.3e-137 494.6 804 40.0
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 1.8e-137 494.2 801 40.7
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 3.9e-137 493.0 812 40.3
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 5.6e-136 489.2 803 39.5
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 5.3e-134 482.6 290 86.9
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 4.5e-133 479.6 774 39.4
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.3e-132 478.0 532 50.0
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.7e-132 477.6 774 39.1
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 4.9e-132 476.1 799 37.8
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 6.4e-132 475.7 755 39.5
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.1e-131 474.9 754 41.5
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.1e-131 474.9 767 40.5
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 1.2e-130 471.5 765 39.5
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 6.0e-130 469.2 757 39.8
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 7.9e-130 468.8 780 37.8
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 8.7e-129 465.3 760 38.9
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 5.6e-128 462.6 763 40.6
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 9.6e-128 461.8 761 40.2
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 9.6e-128 461.8 767 40.4
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 9.6e-128 461.8 761 40.2
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 2.1e-127 460.7 761 39.0
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 8.1e-127 458.8 770 39.1
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 4.0e-126 456.4 795 38.6
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.7e-124 451.1 770 38.7
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 1.1e-118 431.8 808 37.3
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 5.3e-118 429.5 267 85.8
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.7e-116 424.5 767 36.5
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 3.6e-114 416.8 761 37.1
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 1.3e-108 398.3 719 38.1
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 5.1e-105 386.3 794 33.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.4e-94 351.7 747 32.7
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 3.8e-92 343.6 683 35.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.3e-89 334.3 701 35.2
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 4.8e-79 300.1 167 89.8
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 2.8e-71 274.2 317 51.7
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 3.0e-65 254.2 171 74.9
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 1.5e-64 251.9 387 41.6
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 2.0e-53 214.9 157 71.3
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 2.5e-51 208.0 463 33.7
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 2.2e-47 194.9 496 30.0
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 3.7e-47 194.1 555 28.5
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 5.6e-43 180.3 471 28.2
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.4e-38 165.6 106 81.1
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.4e-33 149.1 80 88.8
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 2.6e-32 144.8 105 72.4
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 5.8e-32 143.7 114 64.0
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 6.0e-29 133.7 196 38.3
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 1.7e-28 132.1 102 62.7
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 3.9e-28 131.0 113 60.2
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 3.9e-28 131.0 393 30.5
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 3.6e-26 124.4 90 64.4
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 3.6e-26 124.4 90 64.4
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-25 121.7 92 70.7
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 5.3e-25 120.6 93 62.4
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 1.2e-24 119.4 88 63.6
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 2.6e-24 118.2 380 27.4
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 7.1e-22 110.2 172 37.8
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.8e-20 105.5 109 46.8
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 2.5e-19 101.7 82 62.2
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 9.6e-19 99.8 262 30.9
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 5.8e-16 90.5 55 70.9
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 5.8e-16 90.5 121 46.3
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 8.4e-15 86.7 51 72.5
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 2.4e-14 85.1 135 41.5
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 7.6e-08 63.5 115 33.9


User provided reference genes

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